Detailed information of deep learning profile BP000362.1

  1. Home
  2. Deep Learning Profile > BP000362.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in suprapubic skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000362.1
Cell line/tissue: suprapubic skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR756KRS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.11 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.05 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.11 0.04 0.03 0.10 0.06 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3829 3248 2962 5078 7061 4555 3054 4161 3046 3618 4551 4800 4996 4967 4314 2282 3730 5315 1631 201 13471 789 2874 16224 192 7424 884 291 588 2590 7567 1928 2582 6863 3229 5743 3956 4532 4384 3740 4866 6424 3673 4658 5060 5764 4961 4585 4858 4770 ]
C [ 4724 3028 4884 6499 3760 3394 2654 4524 8613 7203 6353 5655 5015 4102 4528 6159 3788 1788 15352 18468 596 11662 7910 510 74 137 707 223 954 13775 1092 9296 6675 4624 3842 3620 3297 5498 6767 8125 6506 3513 5529 4512 4448 4096 4335 4571 4791 4973 ]
G [ 4846 7063 7072 3003 4613 4577 4012 4221 2570 3010 4009 4281 4151 3744 4962 2448 7047 8503 892 72 2824 5975 1268 1338 18452 11105 10518 18017 15736 841 9233 5899 2168 5440 5320 4173 8279 5138 4201 2450 2643 5307 5097 5220 4648 4005 4216 5567 5162 5078 ]
T [ 5426 5486 3907 4245 3391 6299 9105 5919 4596 4994 3912 4089 4663 6012 5021 7936 4260 3219 950 84 1934 399 6773 753 107 159 6716 294 1547 1619 933 1702 7400 1898 6434 5289 3293 3657 3473 4510 4810 3581 4526 4435 4669 4960 5313 4102 4014 4004 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.01 -0.01 0.02 -0.00 -0.02 0.03 -0.02 -0.01 0.06 -0.04 0.04 -0.04 -0.03 -0.03 -0.00 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.02 -0.01 0.08 0.11 -0.02 0.07 0.03 -0.00 -0.01 -0.04 0.00 -0.02 -0.02 0.07 -0.02 0.03 0.02 0.01 0.00 0.00 -0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.02 0.03 -0.02 -0.01 0.05 0.03 -0.01 0.02 0.11 0.08 0.06 0.10 0.07 -0.02 0.07 0.02 -0.01 0.01 0.01 -0.00 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 0.00 -0.01 -0.02 -0.05 -0.02 -0.04 0.04 -0.03 -0.03 -0.05 0.01 -0.02 0.00 -0.01 -0.04 -0.01 0.02 -0.02 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 131

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages