Detailed information of deep learning profile BP000361.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000361.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR755WXO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.19 0.06 0.07 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4317 4170 4351 5079 4870 4535 4479 4656 3937 4810 4779 3726 3955 3394 5626 6752 2158 7915 2105 1096 1708 1626 276 6335 208 165 1345 7260 703 2728 178 1451 3465 4419 6926 5005 5508 4753 4451 4307 4868 4732 5577 7603 5934 4044 4444 4384 5208 5438 ]
C [ 4894 4929 5087 4213 4168 4792 5116 4996 4906 3140 2870 4617 5027 7668 4043 4710 5401 1955 5364 8959 807 15579 17954 10327 11023 18074 1857 1550 6620 2623 243 1498 7850 6051 3031 4633 3944 4336 4427 4247 3483 3139 4223 4198 4393 4377 3630 5907 6193 4689 ]
G [ 4695 4705 4405 4378 4218 4344 4347 5091 3898 5844 6930 6015 4936 3406 3584 3868 4445 6046 9346 1139 13289 916 100 799 138 82 555 6686 9957 1109 17752 13757 2266 3985 5915 4684 4327 4777 5089 5571 6276 7126 4546 3259 3769 3927 5537 4699 3545 4364 ]
T [ 4737 4839 4800 4973 5387 4972 4701 3900 5902 4849 4064 4285 4725 4175 5390 3313 6639 2727 1828 7449 2839 522 313 1182 7274 322 14886 3147 1363 12183 470 1937 5062 4188 2771 4321 4864 4777 4676 4518 4016 3646 4297 3583 4547 6295 5032 3653 3697 4152 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.00 -0.06 -0.02 0.01 -0.04 0.04 -0.07 -0.04 -0.03 0.07 -0.05 -0.02 -0.08 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.05 0.00 0.03 0.04 -0.00 0.05 0.15 -0.02 0.14 0.19 0.11 0.14 0.20 0.03 -0.01 0.06 0.09 -0.02 -0.02 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.07 -0.01 0.15 -0.02 -0.04 0.01 -0.07 -0.02 0.01 0.06 0.13 -0.02 0.19 0.13 -0.01 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.06 -0.04 -0.07 0.06 -0.04 0.10 -0.01 -0.02 0.04 -0.03 -0.00 0.03 -0.01 -0.02 0.01 0.01 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1921

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 589

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 391

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 378

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 174

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 102

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages