Detailed information of deep learning profile BP000361.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000361.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR755WXO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.06 0.19 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4152 3697 3653 5032 6295 4547 3583 4297 3646 4016 4518 4676 4777 4864 4321 2771 4188 5062 1937 470 12183 1363 3147 14886 322 7274 1182 313 522 2839 7449 1828 2727 6639 3313 5390 4175 4725 4285 4064 4849 5902 3900 4701 4972 5387 4973 4800 4839 4737 ]
C [ 4364 3545 4699 5537 3927 3769 3259 4546 7126 6276 5571 5089 4777 4327 4684 5915 3985 2266 13757 17752 1109 9957 6686 555 82 138 799 100 916 13289 1139 9346 6046 4445 3868 3584 3406 4936 6015 6930 5844 3898 5091 4347 4344 4218 4378 4405 4705 4695 ]
G [ 4689 6193 5907 3630 4377 4393 4198 4223 3139 3483 4247 4427 4336 3944 4633 3031 6051 7850 1498 243 2623 6620 1550 1857 18074 11023 10327 17954 15579 807 8959 5364 1955 5401 4710 4043 7668 5027 4617 2870 3140 4906 4996 5116 4792 4168 4213 5087 4929 4894 ]
T [ 5438 5208 4384 4444 4044 5934 7603 5577 4732 4868 4307 4451 4753 5508 5005 6926 4419 3465 1451 178 2728 703 7260 1345 165 208 6335 276 1626 1708 1096 2105 7915 2158 6752 5626 3394 3955 3726 4779 4810 3937 4656 4479 4535 4870 5079 4351 4170 4317 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.01 0.01 -0.02 -0.01 0.03 -0.00 -0.03 0.04 -0.02 -0.01 0.10 -0.04 0.06 -0.07 -0.04 -0.06 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.01 0.13 0.19 -0.02 0.13 0.06 0.01 -0.02 -0.07 0.01 -0.04 -0.02 0.15 -0.01 0.07 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.02 -0.02 0.09 0.06 -0.01 0.03 0.20 0.14 0.11 0.19 0.14 -0.02 0.15 0.05 -0.00 0.04 0.03 0.00 0.05 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.08 -0.02 -0.05 0.07 -0.03 -0.04 -0.07 0.04 -0.04 0.01 -0.02 -0.06 -0.00 0.04 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1921

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 589

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 391

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 378

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 174

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 102

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages