Detailed information of deep learning profile BP000319.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000319.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR597TGH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ -0.00 0.01 0.03 0.00 0.07 0.12 0.05 0.09 0.18 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.11 -0.00 0.01 0.02 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4153 4416 4379 4123 4219 4276 4074 4083 4255 3708 3900 3752 4684 5182 3360 5636 3142 2270 2568 2076 1349 3873 557 120 1094 6560 589 3186 176 799 3048 3795 6061 4518 5378 4706 3949 3728 4242 3772 4934 7603 5224 3273 3861 3565 4757 5011 3649 3979 ]
C [ 3989 3746 3779 3989 4084 4048 3854 3552 3255 4049 4023 5228 3771 4099 4350 2754 3967 6013 1935 9988 13225 9448 11732 15898 1721 1004 5464 1530 189 835 6190 4887 2144 3530 3069 3359 3574 3307 2434 2121 3359 3052 3478 3448 2630 5452 5479 3796 4200 4241 ]
G [ 3779 3745 3774 3715 3707 3716 3586 4167 4508 4331 3882 3374 3168 3285 3485 4210 6044 2686 7900 2100 798 864 145 56 307 6201 8856 938 15214 13114 1819 3947 5693 4584 3658 4062 4180 4939 5827 7427 3810 2490 3199 3259 5070 3956 2531 3493 4178 3623 ]
T [ 4297 4311 4286 4391 4208 4178 4704 4416 4200 4130 4413 3864 4595 3652 5023 3618 3065 5249 3815 2054 846 2033 3784 144 13096 2453 1309 10564 639 1470 5161 3589 2320 3586 4113 4091 4515 4244 3715 2898 4115 3073 4317 6238 4657 3245 3451 3918 4191 4375 ]

Hypothetical CWM

   
A [ 0.01 -0.02 0.01 -0.01 -0.04 -0.02 -0.00 -0.04 0.00 -0.06 -0.05 -0.04 0.06 -0.07 -0.02 -0.09 -0.05 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 -0.00 0.00 -0.00 0.01 0.04 0.01 -0.01 ]
C [ 0.01 0.02 -0.01 0.02 0.07 -0.01 0.08 0.14 0.09 0.13 0.18 0.02 -0.04 0.05 0.06 -0.04 -0.04 0.05 0.04 -0.01 0.01 0.00 0.01 0.00 0.00 -0.01 -0.03 -0.01 -0.01 0.00 0.00 ]
G [ 0.00 0.01 0.02 0.04 -0.00 0.08 -0.02 -0.03 -0.01 -0.08 -0.03 -0.02 0.05 0.11 -0.03 0.18 0.13 -0.02 0.04 0.05 0.02 0.01 0.01 0.02 0.03 0.04 0.06 0.00 -0.03 -0.01 -0.00 ]
T [ -0.01 0.01 -0.01 -0.01 0.01 -0.01 -0.04 -0.05 -0.05 0.02 -0.06 0.09 -0.01 -0.02 0.04 -0.03 -0.01 0.03 -0.02 -0.03 -0.01 0.00 0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 0.00 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1568

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 119

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000071.1 CTCF ENCSR000DRP GM12873 Homo sapiens MA0139.2
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages