Detailed information of deep learning profile BP000319.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000319.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR597TGH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.18 0.09 0.05 0.12 0.07 0.00 0.03 0.01 -0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 ]

Frequency matrix

       
A [ 4375 4191 3918 3451 3245 4657 6238 4317 3073 4115 2898 3715 4244 4515 4091 4113 3586 2320 3589 5161 1470 639 10564 1309 2453 13096 144 3784 2033 846 2054 3815 5249 3065 3618 5023 3652 4595 3864 4413 4130 4200 4416 4704 4178 4208 4391 4286 4311 4297 ]
C [ 3623 4178 3493 2531 3956 5070 3259 3199 2490 3810 7427 5827 4939 4180 4062 3658 4584 5693 3947 1819 13114 15214 938 8856 6201 307 56 145 864 798 2100 7900 2686 6044 4210 3485 3285 3168 3374 3882 4331 4508 4167 3586 3716 3707 3715 3774 3745 3779 ]
G [ 4241 4200 3796 5479 5452 2630 3448 3478 3052 3359 2121 2434 3307 3574 3359 3069 3530 2144 4887 6190 835 189 1530 5464 1004 1721 15898 11732 9448 13225 9988 1935 6013 3967 2754 4350 4099 3771 5228 4023 4049 3255 3552 3854 4048 4084 3989 3779 3746 3989 ]
T [ 3979 3649 5011 4757 3565 3861 3273 5224 7603 4934 3772 4242 3728 3949 4706 5378 4518 6061 3795 3048 799 176 3186 589 6560 1094 120 557 3873 1349 2076 2568 2270 3142 5636 3360 5182 4684 3752 3900 3708 4255 4083 4074 4276 4219 4123 4379 4416 4153 ]

Hypothetical CWM

   
A [ 0.02 0.00 -0.01 0.01 -0.01 -0.01 -0.00 0.00 0.00 0.00 -0.01 -0.03 -0.02 0.03 -0.01 -0.03 0.04 -0.02 -0.01 0.09 -0.06 0.02 -0.05 -0.05 -0.04 -0.01 0.01 -0.01 -0.01 0.01 -0.01 ]
C [ -0.00 -0.01 -0.03 0.00 0.06 0.04 0.03 0.02 0.01 0.01 0.02 0.05 0.04 -0.02 0.13 0.18 -0.03 0.11 0.05 -0.02 -0.03 -0.08 -0.01 -0.03 -0.02 0.08 -0.00 0.04 0.02 0.01 0.00 ]
G [ 0.00 0.00 -0.01 -0.01 -0.03 -0.01 0.00 0.00 0.01 0.00 0.01 -0.01 0.04 0.05 -0.04 -0.04 0.06 0.05 -0.04 0.02 0.18 0.13 0.09 0.14 0.08 -0.01 0.07 0.02 -0.01 0.02 0.01 ]
T [ -0.01 0.01 0.04 0.01 -0.00 0.00 -0.00 -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.05 -0.09 -0.02 -0.07 0.06 -0.04 -0.05 -0.06 0.00 -0.04 -0.00 -0.02 -0.04 -0.01 0.01 -0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1568

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 358

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 119

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages