Detailed information of deep learning profile BP000240.1

  1. Home
  2. Deep Learning Profile > BP000240.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000240.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR374PKX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.11 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.08 0.06 0.19 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4431 3992 3815 5282 6823 4928 3907 4518 3938 4272 4901 4954 5073 5191 4557 2912 4549 5411 2114 691 12840 1459 3325 15974 330 7566 1363 388 597 3212 7916 2029 2985 6997 3545 5796 4448 4999 4550 4354 5140 6234 4222 5133 5393 5665 5319 5171 5221 5120 ]
C [ 4688 3758 5038 6087 4160 3992 3544 4881 7667 6729 5950 5432 5145 4649 5130 6551 4305 2462 14746 18723 1127 10680 7153 540 81 177 794 134 1024 14032 1285 9881 6394 4759 4211 3815 3682 5242 6383 7335 6235 4125 5434 4668 4542 4471 4684 4753 5090 5061 ]
G [ 5035 6565 6463 3857 4700 4747 4442 4646 3385 3785 4523 4816 4629 4154 4956 3196 6352 8471 1566 294 3012 7060 1702 1993 19357 11957 11133 19110 16570 888 9540 5738 2170 5752 5016 4288 8108 5401 4954 3158 3399 5319 5342 5378 5129 4596 4527 5392 5213 5149 ]
T [ 5783 5622 4621 4711 4254 6270 8044 5892 4947 5151 4563 4735 5090 5943 5294 7278 4731 3593 1511 229 2958 738 7757 1430 169 237 6647 305 1746 1805 1196 2289 8388 2429 7165 6038 3699 4295 4050 5090 5163 4259 4939 4758 4873 5205 5407 4621 4413 4607 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.00 -0.02 -0.02 0.03 -0.00 -0.03 0.04 -0.03 -0.02 0.10 -0.06 0.06 -0.08 -0.05 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.02 0.01 0.03 0.06 0.05 -0.01 0.13 0.20 -0.02 0.14 0.06 -0.00 -0.01 -0.07 0.01 -0.04 -0.03 0.15 -0.02 0.07 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.02 0.01 0.02 0.00 0.05 0.06 -0.03 -0.02 0.09 0.06 -0.02 0.03 0.20 0.15 0.12 0.20 0.15 -0.03 0.15 0.05 -0.01 0.03 0.03 0.00 0.04 0.02 ]
T [ 0.00 0.01 0.01 0.03 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.07 -0.04 -0.05 -0.09 0.04 -0.05 0.01 -0.03 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1640

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 440

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 349

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 185

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 154

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages