Detailed information of deep learning profile BP000240.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000240.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR374PKX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.19 0.06 0.08 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.11 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4607 4413 4621 5407 5205 4873 4758 4939 4259 5163 5090 4050 4295 3699 6038 7165 2429 8388 2289 1196 1805 1746 305 6647 237 169 1430 7757 738 2958 229 1511 3593 4731 7278 5294 5943 5090 4735 4563 5151 4947 5892 8044 6270 4254 4711 4621 5622 5783 ]
C [ 5149 5213 5392 4527 4596 5129 5378 5342 5319 3399 3158 4954 5401 8108 4288 5016 5752 2170 5738 9540 888 16570 19110 11133 11957 19357 1993 1702 7060 3012 294 1566 8471 6352 3196 4956 4154 4629 4816 4523 3785 3385 4646 4442 4747 4700 3857 6463 6565 5035 ]
G [ 5061 5090 4753 4684 4471 4542 4668 5434 4125 6235 7335 6383 5242 3682 3815 4211 4759 6394 9881 1285 14032 1024 134 794 177 81 540 7153 10680 1127 18723 14746 2462 4305 6551 5130 4649 5145 5432 5950 6729 7667 4881 3544 3992 4160 6087 5038 3758 4688 ]
T [ 5120 5221 5171 5319 5665 5393 5133 4222 6234 5140 4354 4550 4999 4448 5796 3545 6997 2985 2029 7916 3212 597 388 1363 7566 330 15974 3325 1459 12840 691 2114 5411 4549 2912 4557 5191 5073 4954 4901 4272 3938 4518 3907 4928 6823 5282 3815 3992 4431 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.03 0.01 -0.05 0.04 -0.09 -0.05 -0.04 0.07 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.03 0.01 0.01 0.00 ]
C [ 0.02 0.04 0.00 0.03 0.03 -0.01 0.05 0.15 -0.03 0.15 0.20 0.12 0.15 0.20 0.03 -0.02 0.06 0.09 -0.02 -0.03 0.06 0.05 0.00 0.02 0.01 0.02 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.07 -0.02 0.15 -0.03 -0.04 0.01 -0.07 -0.01 -0.00 0.06 0.14 -0.02 0.20 0.13 -0.01 0.05 0.06 0.03 0.01 0.02 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.05 -0.08 0.06 -0.06 0.10 -0.02 -0.03 0.04 -0.03 -0.00 0.03 -0.02 -0.02 0.00 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1640

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 440

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 349

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 185

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 154

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages