Detailed information of deep learning profile BP000236.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in PC-3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000236.1
Cell line/tissue: PC-3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR359LOD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.14 0.05 0.07 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4819 4644 4797 5075 5047 4888 4939 4898 4621 5153 4908 4252 4369 4074 5937 6918 3039 7896 2947 1726 2156 1772 585 5891 433 308 1843 7267 1008 4188 515 1598 3846 4806 6715 4967 5905 5264 4884 4863 5243 4909 5791 7665 6026 4514 4951 4609 5588 5619 ]
C [ 5128 5345 5323 5028 5058 5279 5322 5409 5141 4243 4055 5511 5359 7514 4599 5253 5877 2552 5312 9247 1279 15706 18793 11295 13595 19333 2554 2209 7433 2850 605 1842 7893 6084 3436 4926 4305 4745 4730 4457 3877 3641 4657 4607 4742 4724 4036 6401 6294 5055 ]
G [ 5056 5059 4880 4931 4865 4762 4917 5225 4671 5706 6553 5820 5163 4218 4144 4179 4683 6225 9492 2105 12852 1638 303 709 160 122 614 7296 9667 1803 17837 14290 2775 4616 6614 5616 4889 5401 5512 5985 6753 7654 5052 3915 4315 4564 5963 5105 3988 4833 ]
T [ 5194 5149 5197 5163 5227 5268 5019 4665 5764 5095 4681 4614 5306 4391 5517 3847 6598 3524 2446 7119 3910 1081 516 2302 6009 434 15186 3425 2089 11356 1240 2467 5683 4691 3432 4688 5098 4787 5071 4892 4324 3993 4697 4010 5114 6395 5247 4082 4327 4690 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.03 -0.03 0.03 -0.01 -0.04 -0.02 0.00 -0.03 0.02 -0.05 -0.02 -0.02 0.05 -0.04 -0.01 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.01 0.04 0.11 -0.01 0.12 0.15 0.10 0.12 0.16 0.03 -0.01 0.04 0.05 -0.03 -0.02 0.04 0.03 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.04 -0.01 -0.06 -0.03 -0.01 0.04 0.10 -0.01 0.16 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.08 -0.01 -0.01 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 177

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages