Detailed information of deep learning profile BP000236.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in PC-3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000236.1
Cell line/tissue: PC-3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR359LOD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.07 0.05 0.14 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

A [ 4690 4327 4082 5247 6395 5114 4010 4697 3993 4324 4892 5071 4787 5098 4688 3432 4691 5683 2467 1240 11356 2089 3425 15186 434 6009 2302 516 1081 3910 7119 2446 3524 6598 3847 5517 4391 5306 4614 4681 5095 5764 4665 5019 5268 5227 5163 5197 5149 5194 ]
C [ 4833 3988 5105 5963 4564 4315 3915 5052 7654 6753 5985 5512 5401 4889 5616 6614 4616 2775 14290 17837 1803 9667 7296 614 122 160 709 303 1638 12852 2105 9492 6225 4683 4179 4144 4218 5163 5820 6553 5706 4671 5225 4917 4762 4865 4931 4880 5059 5056 ]
G [ 5055 6294 6401 4036 4724 4742 4607 4657 3641 3877 4457 4730 4745 4305 4926 3436 6084 7893 1842 605 2850 7433 2209 2554 19333 13595 11295 18793 15706 1279 9247 5312 2552 5877 5253 4599 7514 5359 5511 4055 4243 5141 5409 5322 5279 5058 5028 5323 5345 5128 ]
T [ 5619 5588 4609 4951 4514 6026 7665 5791 4909 5243 4863 4884 5264 5905 4967 6715 4806 3846 1598 515 4188 1008 7267 1843 308 433 5891 585 1772 2156 1726 2947 7896 3039 6918 5937 4074 4369 4252 4908 5153 4621 4898 4939 4888 5047 5075 4797 4644 4819 ]

Hypothetical CWM

A [ 0.00 0.01 0.01 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.01 -0.01 0.08 -0.04 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.16 -0.01 0.10 0.04 -0.01 -0.03 -0.06 -0.01 -0.04 -0.02 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.03 0.05 0.04 -0.01 0.03 0.16 0.12 0.10 0.15 0.12 -0.01 0.11 0.04 -0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.01 -0.04 0.05 -0.02 -0.02 -0.05 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.03 -0.03 0.03 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 177

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages