Detailed information of deep learning profile BP000235.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000235.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR355PMV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.16 0.06 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3766 3379 3101 4633 5905 4175 3191 3843 3252 3485 4028 4119 4375 4399 3802 2439 3704 4609 1661 490 11312 1111 2687 13951 193 6716 934 220 353 2492 6912 1629 2321 6134 2998 5016 3594 4276 3815 3583 4383 5563 3456 4272 4465 4918 4412 4386 4371 4273 ]
C [ 3900 2876 4200 4982 3392 3152 2652 3959 6444 5596 5150 4648 4229 3690 4191 5244 3378 1795 12672 15787 811 9003 6418 378 60 113 525 44 507 12019 791 8382 5432 3870 3279 3032 2972 4402 5401 6282 5263 3325 4573 3809 3670 3648 3724 3841 4175 4115 ]
G [ 4072 5668 5439 3022 3930 3886 3577 3699 2614 2953 3619 3811 3643 3307 4014 2506 5436 7089 1078 169 2208 5923 1190 1348 16233 9595 9073 16167 14387 499 7997 4898 1567 4735 4312 3423 6970 4374 4058 2405 2582 4252 4330 4458 4257 3638 3714 4510 4322 4272 ]
T [ 4843 4658 3841 3944 3354 5368 7161 5080 4271 4547 3784 4003 4334 5185 4574 6392 4063 3088 1170 135 2250 544 6286 904 95 157 6049 150 1334 1571 881 1672 7261 1842 5992 5110 3045 3529 3307 4311 4353 3441 4222 4042 4189 4377 4731 3844 3713 3921 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.04 -0.03 -0.02 0.09 -0.05 0.05 -0.06 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.11 0.17 -0.03 0.11 0.05 -0.01 -0.01 -0.07 -0.01 -0.05 -0.03 0.11 -0.02 0.06 0.04 0.02 0.01 0.00 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.04 0.05 -0.03 -0.03 0.07 0.05 -0.02 0.02 0.16 0.12 0.09 0.16 0.11 -0.03 0.11 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.08 -0.02 -0.05 0.06 -0.03 -0.04 -0.06 0.03 -0.03 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2697

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 441

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 416

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000051.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000052.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000053.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000054.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000055.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000056.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000057.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000058.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000059.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000060.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages