Detailed information of deep learning profile BP000219.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in breast epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000219.1
Cell line/tissue: breast epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR304XUZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.06 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.12 0.05 0.03 0.10 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3543 2926 2612 4696 6708 4304 2734 3925 2629 3238 4241 4479 4611 4609 3967 2067 3327 4904 1447 208 12496 752 2614 15017 203 6300 880 352 692 2394 6783 1911 2598 6257 3057 5295 3714 4154 4156 3511 4432 5919 3492 4358 4640 5310 4461 4201 4451 4351 ]
C [ 4430 2774 4555 6237 3577 3209 2423 4174 8491 6961 5921 5408 4768 3869 4243 5676 3570 1673 14444 17139 666 11034 7548 529 92 150 711 252 871 12888 1047 8364 6079 4300 3663 3399 3109 5136 6244 7504 6031 3356 5179 4228 4303 3874 4090 4412 4495 4709 ]
G [ 4516 6646 6762 2720 4210 4274 3599 3880 2297 2785 3728 3938 3838 3420 4491 2222 6868 7958 800 96 2588 5354 1231 1238 17144 10910 9900 16602 14599 820 8812 5519 2290 5128 4990 3999 7605 4816 3909 2369 2619 4989 4774 4848 4334 3862 4026 5147 4912 4647 ]
T [ 5038 5181 3598 3874 3032 5740 8771 5548 4110 4543 3637 3702 4310 5629 4826 7562 3762 2992 836 84 1777 387 6134 743 88 167 6036 321 1365 1425 885 1733 6560 1842 5817 4834 3099 3421 3218 4143 4445 3263 4082 4093 4250 4481 4950 3767 3669 3820 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.06 -0.03 0.03 -0.04 -0.04 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 -0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.00 0.09 0.13 -0.02 0.08 0.05 0.01 -0.00 -0.03 0.01 -0.01 -0.02 0.08 -0.01 0.04 0.02 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.01 0.07 0.04 -0.00 0.02 0.12 0.09 0.07 0.11 0.08 -0.01 0.08 0.03 0.00 0.02 0.01 0.00 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 0.00 -0.01 -0.03 -0.06 -0.02 -0.04 0.04 -0.03 -0.04 -0.06 0.01 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 910

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 714

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 28

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages