Detailed information of deep learning profile BP000219.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in breast epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000219.1
Cell line/tissue: breast epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR304XUZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.10 0.03 0.05 0.12 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.06 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3820 3669 3767 4950 4481 4250 4093 4082 3263 4445 4143 3218 3421 3099 4834 5817 1842 6560 1733 885 1425 1365 321 6036 167 88 743 6134 387 1777 84 836 2992 3762 7562 4826 5629 4310 3702 3637 4543 4110 5548 8771 5740 3032 3874 3598 5181 5038 ]
C [ 4647 4912 5147 4026 3862 4334 4848 4774 4989 2619 2369 3909 4816 7605 3999 4990 5128 2290 5519 8812 820 14599 16602 9900 10910 17144 1238 1231 5354 2588 96 800 7958 6868 2222 4491 3420 3838 3938 3728 2785 2297 3880 3599 4274 4210 2720 6762 6646 4516 ]
G [ 4709 4495 4412 4090 3874 4303 4228 5179 3356 6031 7504 6244 5136 3109 3399 3663 4300 6079 8364 1047 12888 871 252 711 150 92 529 7548 11034 666 17139 14444 1673 3570 5676 4243 3869 4768 5408 5921 6961 8491 4174 2423 3209 3577 6237 4555 2774 4430 ]
T [ 4351 4451 4201 4461 5310 4640 4358 3492 5919 4432 3511 4156 4154 3714 5295 3057 6257 2598 1911 6783 2394 692 352 880 6300 203 15017 2614 752 12496 208 1447 4904 3327 2067 3967 4609 4611 4479 4241 3238 2629 3925 2734 4304 6708 4696 2612 2926 3543 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.01 -0.06 -0.04 -0.03 0.04 -0.04 -0.02 -0.06 -0.03 -0.01 0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 0.00 0.01 0.02 0.00 0.03 0.08 -0.01 0.08 0.11 0.07 0.09 0.12 0.02 -0.00 0.04 0.07 -0.01 -0.02 0.04 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.02 0.04 -0.01 0.08 -0.02 -0.01 0.01 -0.03 -0.00 0.01 0.05 0.08 -0.02 0.13 0.09 -0.00 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ -0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.03 -0.04 -0.04 0.03 -0.03 0.06 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 910

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 714

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 28

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages