Detailed information of deep learning profile BP000215.1

  1. Home
  2. Deep Learning Profile > BP000215.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000215.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR298ZPF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.10 0.20 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.22 0.09 0.06 0.20 0.14 -0.00 0.07 0.02 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4920 4430 4287 5742 7142 5364 4219 4949 4208 4645 5184 5455 5500 5605 4877 3251 4998 5806 2350 1294 13355 1610 3624 17400 302 7836 1729 427 688 3703 8230 2184 3306 7561 3805 6222 4678 5414 4906 4666 5587 6696 4575 5473 5685 6061 5584 5504 5592 5540 ]
C [ 5151 4275 5667 6451 4784 4548 4022 5396 8243 7219 6619 5858 5683 5230 5840 7306 4603 2683 16183 19916 1154 11670 8249 660 96 197 1119 162 1138 15119 1331 10840 6923 5326 4785 4273 4118 5853 6982 7983 6859 4717 6022 5144 5072 5052 5115 5386 5532 5477 ]
G [ 5599 7213 6906 4473 5351 5322 5156 5288 3985 4255 4962 5269 5135 4621 5478 3633 6951 9317 1715 330 3992 7783 2062 2240 21244 13540 12070 20921 18182 993 10966 6361 2615 6347 5679 4931 8965 5948 5488 3736 3873 5813 5960 6033 5861 5138 5323 6015 5866 5868 ]
T [ 6138 5890 4948 5142 4531 6574 8411 6175 5372 5689 5043 5226 5490 6352 5613 7618 5256 4002 1560 268 3307 745 7873 1508 166 235 6890 298 1800 1993 1281 2423 8964 2574 7539 6382 4047 4593 4432 5423 5489 4582 5251 5158 5190 5557 5786 4903 4818 4923 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.00 -0.02 0.04 -0.03 -0.02 0.10 -0.05 0.06 -0.07 -0.05 -0.06 -0.01 0.03 -0.03 -0.02 0.03 -0.03 0.02 -0.00 -0.00 ]
C [ 0.03 0.02 0.01 0.03 0.07 0.05 -0.01 0.14 0.21 -0.02 0.14 0.07 0.01 -0.02 -0.07 0.01 -0.05 -0.04 0.16 -0.02 0.08 0.06 0.04 0.02 0.01 0.01 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.02 -0.03 0.10 0.07 -0.01 0.04 0.22 0.16 0.13 0.21 0.16 -0.02 0.16 0.06 -0.00 0.04 0.03 0.00 0.05 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.09 -0.03 -0.06 0.06 -0.04 -0.05 -0.09 0.03 -0.05 0.01 -0.03 -0.07 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 655

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 469

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 129

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 43

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages