Detailed information of deep learning profile BP000215.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000215.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR298ZPF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.07 -0.00 0.14 0.20 0.06 0.09 0.22 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.10 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4923 4818 4903 5786 5557 5190 5158 5251 4582 5489 5423 4432 4593 4047 6382 7539 2574 8964 2423 1281 1993 1800 298 6890 235 166 1508 7873 745 3307 268 1560 4002 5256 7618 5613 6352 5490 5226 5043 5689 5372 6175 8411 6574 4531 5142 4948 5890 6138 ]
C [ 5868 5866 6015 5323 5138 5861 6033 5960 5813 3873 3736 5488 5948 8965 4931 5679 6347 2615 6361 10966 993 18182 20921 12070 13540 21244 2240 2062 7783 3992 330 1715 9317 6951 3633 5478 4621 5135 5269 4962 4255 3985 5288 5156 5322 5351 4473 6906 7213 5599 ]
G [ 5477 5532 5386 5115 5052 5072 5144 6022 4717 6859 7983 6982 5853 4118 4273 4785 5326 6923 10840 1331 15119 1138 162 1119 197 96 660 8249 11670 1154 19916 16183 2683 4603 7306 5840 5230 5683 5858 6619 7219 8243 5396 4022 4548 4784 6451 5667 4275 5151 ]
T [ 5540 5592 5504 5584 6061 5685 5473 4575 6696 5587 4666 4906 5414 4678 6222 3805 7561 3306 2184 8230 3703 688 427 1729 7836 302 17400 3624 1610 13355 1294 2350 5806 4998 3251 4877 5605 5500 5455 5184 4645 4208 4949 4219 5364 7142 5742 4287 4430 4920 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.07 -0.03 0.01 -0.05 0.03 -0.09 -0.05 -0.04 0.06 -0.06 -0.03 -0.09 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.05 0.00 0.03 0.04 -0.00 0.06 0.16 -0.02 0.16 0.21 0.13 0.16 0.22 0.04 -0.01 0.07 0.10 -0.03 -0.02 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.01 0.01 0.02 0.04 0.06 0.08 -0.02 0.16 -0.04 -0.05 0.01 -0.07 -0.02 0.01 0.07 0.14 -0.02 0.21 0.14 -0.01 0.05 0.07 0.03 0.01 0.02 0.03 ]
T [ -0.00 -0.00 0.02 -0.03 0.03 -0.02 -0.03 0.03 -0.01 -0.06 -0.05 -0.07 0.06 -0.05 0.10 -0.02 -0.03 0.04 -0.02 -0.00 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 655

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 469

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 129

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 43

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages