Detailed information of deep learning profile BP000212.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000212.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR288YJL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.05 -0.00 -0.01 0.16 0.00 0.02 0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.18 0.28 0.00 0.08 0.03 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.02 0.02 0.00 0.00 0.01 0.01 0.00 0.00 0.29 0.12 0.12 0.24 0.17 ]
T [ 0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.01 -0.01 0.03 -0.00 0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

A [ 9 7 7 7 7 7 12 7 10 7 9 9 5 7 11 5 6 6 8 3 3 6 4 10 9 7 8 10 3 6 6 13 12 8 6 1 2 0 10 1 1 25 1 8 36 0 12 0 0 1 ]
C [ 11 7 11 6 4 6 9 10 5 9 6 10 11 7 7 7 6 5 1 3 5 3 5 1 2 3 2 3 3 0 3 6 4 3 7 14 10 7 3 35 36 0 20 20 0 0 0 0 0 2 ]
G [ 12 16 12 16 18 17 11 15 16 14 17 9 20 14 16 19 16 19 23 20 23 24 21 24 26 25 24 19 21 28 26 14 18 16 10 12 3 23 19 0 0 7 14 0 0 37 25 32 37 34 ]
T [ 5 7 7 8 8 7 5 5 6 7 5 9 1 9 3 6 9 7 5 11 6 4 7 2 0 2 3 5 10 3 2 4 3 10 14 10 22 7 5 1 0 5 2 9 1 0 0 5 0 0 ]

Hypothetical CWM

A [ 0.01 0.01 0.01 -0.00 -0.04 -0.03 0.04 -0.02 -0.05 0.07 -0.04 -0.03 0.17 -0.14 0.07 -0.11 -0.11 -0.09 ]
C [ 0.02 0.01 -0.00 0.02 0.07 0.04 -0.03 0.19 0.28 -0.07 0.16 0.06 -0.06 -0.08 -0.15 -0.03 -0.10 -0.08 ]
G [ -0.01 -0.00 -0.00 0.01 -0.03 0.04 0.05 -0.09 -0.09 0.08 0.05 -0.08 0.01 0.29 0.20 0.14 0.24 0.17 ]
T [ 0.00 0.01 0.02 0.01 0.04 -0.01 -0.02 -0.06 -0.15 -0.04 -0.13 0.12 -0.07 -0.08 -0.11 0.03 -0.08 0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17028

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1011

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 369

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 276

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 155

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 42

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 24

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000432.1 CTCF ENCSR957UPE middle frontal area 46 Homo sapiens MA0139.2
BP000433.1 CTCF ENCSR960MDF ascending aorta Homo sapiens MA0139.2
BP000434.1 CTCF ENCSR961IOA Caco-2 Homo sapiens MA0139.2
BP000435.1 CTCF ENCSR961SKY spleen Homo sapiens MA0139.2
BP000436.1 CTCF ENCSR964BKO upper lobe of left lung Homo sapiens MA0139.2
BP000437.1 CTCF ENCSR966OUM nephron Homo sapiens MA0139.2
BP000438.1 CTCF ENCSR967BSF spleen Homo sapiens MA0139.2
BP000439.1 CTCF ENCSR967QUQ middle frontal area 46 Homo sapiens MA0139.2
BP000440.1 CTCF ENCSR970UZD upper lobe of left lung Homo sapiens MA0139.2
BP000441.1 CTCF ENCSR972LYL upper lobe of left lung Homo sapiens MA0139.2
Showing 10 profiles of page 44 from 45 pages