Detailed information of deep learning profile BP000211.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000211.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR287UXS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.01 -0.00 0.02 0.05 -0.00 0.10 0.18 0.06 0.06 0.19 0.00 0.00 0.01 0.00 0.00 -0.00 0.02 0.02 -0.00 0.00 ]
G [ 0.00 0.01 0.04 0.00 0.09 0.00 0.01 -0.00 0.00 0.00 -0.00 0.02 0.07 -0.00 0.19 0.12 0.00 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.07 -0.01 -0.00 0.04 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 25 111 21 14 34 22 5 83 10 4 15 78 11 21 5 12 36 43 120 67 81 65 55 42 56 43 59 95 142 36 50 58 4 169 45 38 50 58 54 57 51 57 60 40 61 53 61 41 67 65 ]
C [ 75 10 72 80 16 152 188 109 96 184 30 13 68 19 2 8 95 91 21 42 29 40 42 73 49 26 30 41 12 67 8 4 194 10 23 69 56 41 55 48 50 65 42 48 49 44 39 57 42 42 ]
G [ 29 61 89 19 125 21 7 4 4 10 3 75 112 8 185 171 25 25 43 52 46 50 61 47 54 100 79 18 40 28 23 132 5 7 104 46 38 55 45 36 50 35 50 46 42 40 48 51 48 52 ]
T [ 79 26 26 95 33 13 8 12 98 10 160 42 17 160 16 17 52 49 24 47 52 53 50 46 49 39 40 54 14 77 127 14 5 22 36 55 64 54 54 67 57 51 56 74 56 71 60 59 51 49 ]

Hypothetical CWM

   
A [ -0.05 0.03 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.07 -0.04 -0.04 0.06 -0.05 -0.02 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.04 -0.01 0.05 0.14 -0.01 0.14 0.19 0.13 0.14 0.20 0.04 -0.01 0.06 0.08 -0.02 -0.03 0.06 0.05 0.00 0.02 0.01 0.02 0.00 ]
G [ 0.04 0.05 0.08 -0.01 0.14 -0.02 -0.03 -0.00 -0.05 -0.02 -0.00 0.06 0.14 -0.02 0.20 0.13 -0.00 0.04 0.06 0.02 0.01 0.01 0.02 ]
T [ 0.03 -0.02 -0.03 0.02 -0.02 -0.05 -0.04 -0.07 0.05 -0.05 0.09 -0.01 -0.03 0.05 -0.04 -0.01 0.03 -0.02 -0.03 -0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17799

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1430

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 107

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 104

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages