Detailed information of deep learning profile BP000211.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000211.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR287UXS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.04 -0.00 -0.01 0.07 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.00 0.00 0.12 0.19 -0.00 0.07 0.02 -0.00 0.00 0.00 -0.00 0.01 0.00 0.09 0.00 0.04 0.01 0.00 ]
G [ 0.00 -0.00 0.02 0.02 -0.00 0.00 0.00 0.01 0.00 0.00 0.19 0.06 0.06 0.18 0.10 -0.00 0.05 0.02 -0.00 0.01 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 ]

Frequency matrix

       
A [ 49 51 59 60 71 56 74 56 51 57 67 54 54 64 55 36 22 5 14 127 77 14 54 40 39 49 46 50 53 52 47 24 49 52 17 16 160 17 42 160 10 98 12 8 13 33 95 26 26 79 ]
C [ 52 48 51 48 40 42 46 50 35 50 36 45 55 38 46 104 7 5 132 23 28 40 18 79 100 54 47 61 50 46 52 43 25 25 171 185 8 112 75 3 10 4 4 7 21 125 19 89 61 29 ]
G [ 42 42 57 39 44 49 48 42 65 50 48 55 41 56 69 23 10 194 4 8 67 12 41 30 26 49 73 42 40 29 42 21 91 95 8 2 19 68 13 30 184 96 109 188 152 16 80 72 10 75 ]
T [ 65 67 41 61 53 61 40 60 57 51 57 54 58 50 38 45 169 4 58 50 36 142 95 59 43 56 42 55 65 81 67 120 43 36 12 5 21 11 78 15 4 10 83 5 22 34 14 21 111 25 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 -0.00 -0.03 -0.02 0.03 -0.01 -0.04 0.05 -0.03 -0.01 0.09 -0.05 0.05 -0.07 -0.04 -0.05 -0.02 0.02 -0.03 -0.02 0.03 ]
C [ 0.02 0.01 0.01 0.02 0.06 0.04 -0.00 0.13 0.20 -0.02 0.14 0.06 -0.00 -0.02 -0.05 -0.00 -0.03 -0.02 0.14 -0.01 0.08 0.05 0.04 ]
G [ 0.00 0.02 0.01 0.02 0.00 0.05 0.06 -0.03 -0.02 0.08 0.06 -0.01 0.04 0.20 0.14 0.13 0.19 0.14 -0.01 0.14 0.05 -0.01 0.04 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.02 -0.05 0.06 -0.04 -0.04 -0.07 0.03 -0.04 0.01 -0.03 -0.07 -0.01 0.03 -0.05 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17799

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1430

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 107

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 104

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages