Detailed information of deep learning profile BP000206.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000206.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR266CJT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.13 0.06 0.04 0.13 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3535 2990 2743 4613 6184 4096 2801 3758 2791 3238 4092 4294 4612 4542 3953 2114 3385 4747 1473 225 12152 754 2487 14665 159 6814 688 237 398 2215 7039 1627 2220 6350 2932 5207 3622 4128 3906 3364 4453 5812 3324 4132 4525 5139 4450 4174 4335 4233 ]
C [ 4168 2838 4507 5684 3489 3116 2528 4111 7568 6353 5655 5063 4517 3685 4076 5424 3430 1681 13684 16624 573 10398 6875 482 68 120 556 93 700 12755 841 8572 6064 4154 3440 3199 2954 4950 6036 7289 5891 3333 4917 4093 4026 3810 3927 4181 4411 4529 ]
G [ 4401 6371 6136 2878 4235 4087 3759 3939 2469 2919 3700 3914 3730 3426 4425 2366 6408 7689 923 79 2453 5423 1196 1182 16701 9955 9649 16508 14583 653 8380 5313 1773 4843 4803 3735 7453 4603 3960 2258 2431 4679 4629 4777 4271 3639 3829 4932 4662 4567 ]
T [ 4905 4810 3623 3834 3101 5710 7921 5201 4181 4499 3562 3738 4150 5356 4555 7105 3786 2892 929 81 1831 434 6451 680 81 120 6116 171 1328 1386 749 1497 6952 1662 5834 4868 2980 3328 3107 4098 4234 3185 4139 4007 4187 4421 4803 3722 3601 3680 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.08 -0.04 0.05 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.03 -0.01 0.10 0.14 -0.04 0.09 0.04 -0.00 -0.01 -0.06 0.00 -0.03 -0.03 0.10 -0.03 0.05 0.03 0.01 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.01 0.02 0.13 0.10 0.08 0.13 0.10 -0.02 0.10 0.03 -0.00 0.03 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.01 -0.03 -0.07 -0.03 -0.05 0.04 -0.04 -0.05 -0.07 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 297

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 233

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 123

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000071.1 CTCF ENCSR000DRP GM12873 Homo sapiens MA0139.2
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages