Detailed information of deep learning profile BP000206.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000206.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR266CJT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.13 0.04 0.06 0.13 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3680 3601 3722 4803 4421 4187 4007 4139 3185 4234 4098 3107 3328 2980 4868 5834 1662 6952 1497 749 1386 1328 171 6116 120 81 680 6451 434 1831 81 929 2892 3786 7105 4555 5356 4150 3738 3562 4499 4181 5201 7921 5710 3101 3834 3623 4810 4905 ]
C [ 4567 4662 4932 3829 3639 4271 4777 4629 4679 2431 2258 3960 4603 7453 3735 4803 4843 1773 5313 8380 653 14583 16508 9649 9955 16701 1182 1196 5423 2453 79 923 7689 6408 2366 4425 3426 3730 3914 3700 2919 2469 3939 3759 4087 4235 2878 6136 6371 4401 ]
G [ 4529 4411 4181 3927 3810 4026 4093 4917 3333 5891 7289 6036 4950 2954 3199 3440 4154 6064 8572 841 12755 700 93 556 120 68 482 6875 10398 573 16624 13684 1681 3430 5424 4076 3685 4517 5063 5655 6353 7568 4111 2528 3116 3489 5684 4507 2838 4168 ]
T [ 4233 4335 4174 4450 5139 4525 4132 3324 5812 4453 3364 3906 4128 3622 5207 2932 6350 2220 1627 7039 2215 398 237 688 6814 159 14665 2487 754 12152 225 1473 4747 3385 2114 3953 4542 4612 4294 4092 3238 2791 3758 2801 4096 6184 4613 2743 2990 3535 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.07 -0.05 -0.04 0.04 -0.05 -0.03 -0.07 -0.03 -0.01 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.00 0.03 0.10 -0.02 0.10 0.13 0.08 0.10 0.13 0.02 -0.01 0.04 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.01 0.03 0.05 -0.03 0.10 -0.03 -0.03 0.00 -0.06 -0.01 -0.00 0.04 0.09 -0.04 0.14 0.10 -0.01 0.03 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.05 -0.04 0.08 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 297

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 233

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 123

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages