Detailed information of deep learning profile BP000204.1

  1. Home
  2. Deep Learning Profile > BP000204.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in VCaP using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000204.1
Cell line/tissue: VCaP
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR265ARE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.07 0.04 0.14 0.09 -0.00 0.04 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3831 3499 3318 4522 5246 4128 3293 3836 3299 3549 3991 4058 3991 4207 3678 2692 3746 4494 1680 148 10163 1283 2735 12385 346 5253 1697 442 1038 3450 5695 2197 2995 5176 3239 4574 3662 4269 3719 3770 4194 4772 3656 4164 4266 4311 4300 4304 4124 4150 ]
C [ 4090 3321 4404 4950 3798 3648 3146 4110 6393 5704 5089 4656 4565 4149 4656 5468 3795 2162 12413 16479 1195 8418 6400 620 126 256 812 248 1754 10213 1887 7561 5117 3912 3564 3593 3576 4353 5033 5584 4940 3793 4506 3979 4012 4149 4081 4105 4307 4348 ]
G [ 4085 5391 5274 3352 4003 3961 3897 3930 3019 3304 3757 4057 3870 3472 4181 2796 5334 6809 1417 33 2047 6270 1769 2235 16003 10841 8996 15607 12334 1193 7653 4495 2425 5022 4569 4048 6218 4527 4446 3359 3435 4447 4510 4503 4478 4258 4248 4468 4552 4257 ]
T [ 4705 4500 3715 3887 3664 4974 6375 4835 4000 4154 3874 3940 4285 4883 4196 5755 3836 3246 1201 51 3306 740 5807 1471 236 361 5206 414 1585 1855 1476 2458 6174 2601 5339 4496 3255 3562 3513 3998 4142 3699 4039 4065 3955 3993 4082 3834 3728 3956 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.03 0.04 -0.03 -0.02 0.08 -0.05 0.04 -0.05 -0.04 -0.04 -0.02 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.03 -0.02 0.11 0.16 -0.02 0.10 0.05 -0.02 -0.04 -0.06 -0.01 -0.04 -0.03 0.10 -0.01 0.06 0.04 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.03 0.06 0.04 -0.02 0.02 0.15 0.11 0.09 0.15 0.11 -0.02 0.10 0.03 -0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.07 -0.03 -0.06 0.05 -0.04 -0.03 -0.07 0.03 -0.04 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1744

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 779

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 725

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 88

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 65

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages