Detailed information of deep learning profile BP000204.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in VCaP using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000204.1
Cell line/tissue: VCaP
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR265ARE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.04 -0.00 0.09 0.14 0.04 0.07 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3956 3728 3834 4082 3993 3955 4065 4039 3699 4142 3998 3513 3562 3255 4496 5339 2601 6174 2458 1476 1855 1585 414 5206 361 236 1471 5807 740 3306 51 1201 3246 3836 5755 4196 4883 4285 3940 3874 4154 4000 4835 6375 4974 3664 3887 3715 4500 4705 ]
C [ 4257 4552 4468 4248 4258 4478 4503 4510 4447 3435 3359 4446 4527 6218 4048 4569 5022 2425 4495 7653 1193 12334 15607 8996 10841 16003 2235 1769 6270 2047 33 1417 6809 5334 2796 4181 3472 3870 4057 3757 3304 3019 3930 3897 3961 4003 3352 5274 5391 4085 ]
G [ 4348 4307 4105 4081 4149 4012 3979 4506 3793 4940 5584 5033 4353 3576 3593 3564 3912 5117 7561 1887 10213 1754 248 812 256 126 620 6400 8418 1195 16479 12413 2162 3795 5468 4656 4149 4565 4656 5089 5704 6393 4110 3146 3648 3798 4950 4404 3321 4090 ]
T [ 4150 4124 4304 4300 4311 4266 4164 3656 4772 4194 3770 3719 4269 3662 4574 3239 5176 2995 2197 5695 3450 1038 442 1697 5253 346 12385 2735 1283 10163 148 1680 4494 3746 2692 3678 4207 3991 4058 3991 3549 3299 3836 3293 4128 5246 4522 3318 3499 3831 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.04 0.03 -0.07 -0.03 -0.04 0.05 -0.06 -0.03 -0.07 -0.03 -0.01 -0.01 0.02 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.01 0.03 0.10 -0.02 0.11 0.15 0.09 0.11 0.15 0.02 -0.02 0.04 0.06 -0.03 -0.02 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.04 0.06 -0.01 0.10 -0.03 -0.04 -0.01 -0.06 -0.04 -0.02 0.05 0.10 -0.02 0.16 0.11 -0.02 0.03 0.04 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.02 -0.04 -0.04 -0.05 0.04 -0.05 0.08 -0.02 -0.03 0.04 -0.03 -0.01 0.01 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1744

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 779

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 725

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 88

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 65

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages