Detailed information of deep learning profile BP000192.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in PC-9 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000192.1
Cell line/tissue: PC-9
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR243INX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.05 0.08 0.19 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 3887 4010 3845 3669 3792 4345 4141 3868 3967 4044 3529 4132 4209 3358 3479 3103 4929 5784 2132 6953 1914 1103 1563 1260 187 5537 181 134 1152 5797 662 2820 289 1241 3126 4011 5684 4270 4832 4246 3856 3804 4288 4142 4708 6474 5063 3577 3837 3780 ]
C [ 4222 4033 4203 4343 4200 3881 3799 4308 4315 4302 4119 2963 2699 4165 4278 6511 3388 4154 4687 1622 4622 7679 627 14137 15730 8872 10126 15806 1549 1399 6167 2276 291 1247 6587 5017 2756 3890 3323 3615 3778 3568 3075 2732 3729 3689 3747 3773 3152 5111 ]
G [ 4102 3971 4013 4037 3904 3794 3667 3666 3730 4293 3593 4924 5761 4952 4271 3055 3167 3333 3753 5187 7986 995 11388 474 63 475 103 51 350 6335 7915 1150 14837 11926 2039 3541 5130 4242 3838 4290 4584 4892 5334 6120 3979 2855 3340 3438 4774 4053 ]
T [ 4034 4231 4184 4196 4349 4225 4638 4403 4233 3606 5004 4226 3576 3770 4217 3576 4761 2974 5673 2483 1723 6468 2667 374 265 1361 5835 254 13194 2714 1501 9999 828 1831 4493 3676 2675 3843 4252 4094 4027 3981 3548 3251 3829 3227 4095 5457 4482 3301 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.02 -0.07 -0.03 0.01 -0.05 0.03 -0.08 -0.04 -0.04 0.07 -0.06 -0.03 -0.08 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.04 -0.00 0.02 0.03 -0.01 0.04 0.13 -0.03 0.14 0.18 0.11 0.14 0.19 0.02 -0.02 0.05 0.07 -0.03 -0.03 0.05 0.04 -0.00 0.01 0.01 ]
G [ 0.02 0.00 0.00 0.01 0.03 0.04 0.07 -0.02 0.14 -0.04 -0.04 -0.01 -0.08 -0.03 -0.00 0.05 0.11 -0.02 0.19 0.12 -0.02 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.06 -0.07 0.05 -0.06 0.10 -0.02 -0.02 0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3091

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 251

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages