Detailed information of deep learning profile BP000192.1

  1. Home
  2. Deep Learning Profile > BP000192.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in PC-9 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000192.1
Cell line/tissue: PC-9
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR243INX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.19 0.08 0.05 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3301 4482 5457 4095 3227 3829 3251 3548 3981 4027 4094 4252 3843 2675 3676 4493 1831 828 9999 1501 2714 13194 254 5835 1361 265 374 2667 6468 1723 2483 5673 2974 4761 3576 4217 3770 3576 4226 5004 3606 4233 4403 4638 4225 4349 4196 4184 4231 4034 ]
C [ 4053 4774 3438 3340 2855 3979 6120 5334 4892 4584 4290 3838 4242 5130 3541 2039 11926 14837 1150 7915 6335 350 51 103 475 63 474 11388 995 7986 5187 3753 3333 3167 3055 4271 4952 5761 4924 3593 4293 3730 3666 3667 3794 3904 4037 4013 3971 4102 ]
G [ 5111 3152 3773 3747 3689 3729 2732 3075 3568 3778 3615 3323 3890 2756 5017 6587 1247 291 2276 6167 1399 1549 15806 10126 8872 15730 14137 627 7679 4622 1622 4687 4154 3388 6511 4278 4165 2699 2963 4119 4302 4315 4308 3799 3881 4200 4343 4203 4033 4222 ]
T [ 3780 3837 3577 5063 6474 4708 4142 4288 3804 3856 4246 4832 4270 5684 4011 3126 1241 289 2820 662 5797 1152 134 181 5537 187 1260 1563 1103 1914 6953 2132 5784 4929 3103 3479 3358 4209 4132 3529 4044 3967 3868 4141 4345 3792 3669 3845 4010 3887 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.02 -0.02 0.10 -0.06 0.05 -0.07 -0.06 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.02 0.12 0.19 -0.02 0.11 0.05 -0.00 -0.03 -0.08 -0.01 -0.04 -0.04 0.14 -0.02 0.07 0.04 0.03 0.01 0.00 0.00 0.02 ]
G [ 0.01 0.01 -0.00 0.04 0.05 -0.03 -0.03 0.07 0.05 -0.02 0.02 0.19 0.14 0.11 0.18 0.14 -0.03 0.13 0.04 -0.01 0.03 0.02 -0.00 0.04 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.08 -0.03 -0.06 0.07 -0.04 -0.04 -0.08 0.03 -0.05 0.01 -0.03 -0.07 -0.02 0.04 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3091

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 251

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages