Detailed information of deep learning profile BP000190.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000190.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR237BTA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.06 -0.00 0.12 0.18 0.05 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.10 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4232 4080 4231 5051 4829 4486 4368 4518 3860 4783 4690 3700 3973 3357 5636 6633 2113 7763 2001 1056 1626 1540 256 6282 234 145 1303 7185 678 2632 223 1450 3429 4358 6773 4938 5562 4714 4415 4341 4847 4687 5459 7536 5738 3912 4334 4331 5199 5253 ]
C [ 4796 4843 4992 4239 4111 4793 4997 4926 4891 3053 2851 4577 4931 7599 3937 4754 5262 2020 5443 8974 711 15507 17704 10168 10782 17846 1768 1597 6535 2811 308 1452 7745 5889 2961 4543 3796 4181 4425 4066 3443 3124 4274 4116 4362 4327 3558 5908 6103 4696 ]
G [ 4595 4670 4403 4275 4131 4216 4281 5108 3817 5704 6836 5879 4839 3357 3465 3714 4411 5940 9173 1003 13245 816 111 791 175 84 599 6457 9851 1027 17179 13501 2238 3988 5909 4707 4184 4745 5007 5467 6193 6991 4468 3163 3684 3819 5562 4580 3392 4305 ]
T [ 4746 4776 4743 4804 5298 4874 4723 3817 5801 4829 3992 4213 4626 4056 5331 3268 6583 2646 1752 7336 2787 506 298 1128 7178 294 14699 3130 1305 11899 659 1966 4957 4134 2726 4181 4827 4729 4522 4495 3886 3567 4168 3554 4585 6311 4915 3550 3675 4115 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.02 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.03 0.06 -0.05 -0.03 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.00 0.03 0.04 -0.00 0.06 0.15 -0.02 0.14 0.18 0.11 0.13 0.18 0.03 -0.01 0.06 0.09 -0.03 -0.02 0.06 0.04 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.07 -0.02 0.14 -0.03 -0.04 0.02 -0.05 -0.01 0.01 0.06 0.12 -0.02 0.18 0.12 -0.01 0.05 0.06 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.07 0.06 -0.04 0.08 -0.01 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 813

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 603

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 233

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000071.1 CTCF ENCSR000DRP GM12873 Homo sapiens MA0139.2
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages