Detailed information of deep learning profile BP000190.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000190.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR237BTA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.10 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.05 0.18 0.12 -0.00 0.06 0.02 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4115 3675 3550 4915 6311 4585 3554 4168 3567 3886 4495 4522 4729 4827 4181 2726 4134 4957 1966 659 11899 1305 3130 14699 294 7178 1128 298 506 2787 7336 1752 2646 6583 3268 5331 4056 4626 4213 3992 4829 5801 3817 4723 4874 5298 4804 4743 4776 4746 ]
C [ 4305 3392 4580 5562 3819 3684 3163 4468 6991 6193 5467 5007 4745 4184 4707 5909 3988 2238 13501 17179 1027 9851 6457 599 84 175 791 111 816 13245 1003 9173 5940 4411 3714 3465 3357 4839 5879 6836 5704 3817 5108 4281 4216 4131 4275 4403 4670 4595 ]
G [ 4696 6103 5908 3558 4327 4362 4116 4274 3124 3443 4066 4425 4181 3796 4543 2961 5889 7745 1452 308 2811 6535 1597 1768 17846 10782 10168 17704 15507 711 8974 5443 2020 5262 4754 3937 7599 4931 4577 2851 3053 4891 4926 4997 4793 4111 4239 4992 4843 4796 ]
T [ 5253 5199 4331 4334 3912 5738 7536 5459 4687 4847 4341 4415 4714 5562 4938 6773 4358 3429 1450 223 2632 678 7185 1303 145 234 6282 256 1540 1626 1056 2001 7763 2113 6633 5636 3357 3973 3700 4690 4783 3860 4518 4368 4486 4829 5051 4231 4080 4232 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.01 0.08 -0.04 0.06 -0.07 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.06 0.05 -0.01 0.12 0.18 -0.02 0.12 0.06 0.01 -0.01 -0.05 0.02 -0.04 -0.03 0.14 -0.02 0.07 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.04 0.06 -0.02 -0.03 0.09 0.06 -0.01 0.03 0.18 0.13 0.11 0.18 0.14 -0.02 0.15 0.06 -0.00 0.04 0.03 0.00 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.03 -0.05 0.06 -0.03 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.02 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 813

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 603

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 233

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages