Detailed information of deep learning profile BP000179.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neural crest cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000179.1
Cell line/tissue: neural crest cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR218MVT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 0.00 0.00 0.03 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.00 ]
C [ 0.24 0.10 0.11 0.26 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.03 0.01 -0.01 -0.01 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.05 0.08 0.00 0.25 0.16 -0.00 0.00 0.02 0.00 ]
T [ 0.00 0.00 0.02 0.00 0.16 -0.01 -0.00 0.05 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1 13 1 0 1 16 0 2 0 0 8 15 20 9 11 14 5 7 3 6 7 10 8 6 5 10 11 10 7 9 3 4 7 9 8 12 9 4 11 7 12 9 9 12 9 13 8 11 9 12 ]
C [ 52 39 33 52 1 2 23 16 1 2 30 31 16 20 22 24 38 36 40 32 27 15 33 33 38 25 25 23 30 25 28 22 25 15 17 22 21 20 20 17 24 20 23 22 17 24 17 15 20 21 ]
G [ 0 1 1 1 2 29 28 2 51 50 6 3 14 17 11 8 3 4 2 2 10 12 3 9 4 4 6 8 10 12 11 12 13 15 14 11 12 17 15 18 11 15 13 7 10 9 15 17 13 12 ]
T [ 0 0 18 0 49 6 2 33 1 1 9 4 3 7 9 7 7 6 8 13 9 16 9 5 6 14 11 12 6 7 11 15 8 14 14 8 11 12 7 11 6 9 8 12 17 7 13 10 11 8 ]

Hypothetical CWM

   
A [ -0.07 0.05 -0.11 -0.05 -0.04 0.11 -0.10 -0.03 -0.13 -0.05 -0.01 -0.01 0.05 0.02 0.02 0.01 0.01 ]
C [ 0.25 0.13 0.18 0.26 0.02 -0.03 0.04 0.08 -0.07 -0.06 0.06 0.03 -0.02 0.01 -0.00 -0.01 -0.02 ]
G [ -0.09 0.00 -0.12 -0.05 -0.00 0.09 0.17 -0.03 0.25 0.17 -0.02 0.06 0.07 0.02 0.01 0.02 0.04 ]
T [ -0.10 -0.10 0.08 -0.11 0.17 -0.03 -0.05 0.07 -0.06 -0.01 0.03 -0.03 -0.03 0.01 0.02 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19868

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 110

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000071.1 CTCF ENCSR000DRP GM12873 Homo sapiens MA0139.2
BP000072.1 CTCF ENCSR000DRR GM12874 Homo sapiens MA0139.2
BP000073.1 CTCF ENCSR000DRU GM12875 Homo sapiens MA0139.2
BP000074.1 CTCF ENCSR000DRZ GM12878 Homo sapiens MA0139.2
BP000075.1 CTCF ENCSR000DSU astrocyte of the spinal cord Homo sapiens MA0139.2
BP000076.1 CTCF ENCSR000DSZ astrocyte of the cerebellum Homo sapiens MA0139.2
BP000077.1 CTCF ENCSR000DTA brain microvascular endothelial cell Homo sapiens MA0139.2
BP000078.1 CTCF ENCSR000DTF cardiac fibroblast Homo sapiens MA0139.2
BP000079.1 CTCF ENCSR000DTI cardiac muscle cell Homo sapiens MA0139.2
BP000080.1 CTCF ENCSR000DTL choroid plexus epithelial cell Homo sapiens MA0139.2
Showing 10 profiles of page 8 from 45 pages