Detailed information of deep learning profile BP000179.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neural crest cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000179.1
Cell line/tissue: neural crest cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR218MVT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 0.00 0.00 0.03 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.00 ]
C [ 0.24 0.10 0.11 0.26 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.03 0.01 -0.01 -0.01 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.05 0.08 0.00 0.25 0.16 -0.00 0.00 0.02 0.00 ]
T [ 0.00 0.00 0.02 0.00 0.16 -0.01 -0.00 0.05 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1 13 1 0 1 16 0 2 0 0 8 15 20 9 11 14 5 7 3 6 7 10 8 6 5 10 11 10 7 9 3 4 7 9 8 12 9 4 11 7 12 9 9 12 9 13 8 11 9 12 ]
C [ 52 39 33 52 1 2 23 16 1 2 30 31 16 20 22 24 38 36 40 32 27 15 33 33 38 25 25 23 30 25 28 22 25 15 17 22 21 20 20 17 24 20 23 22 17 24 17 15 20 21 ]
G [ 0 1 1 1 2 29 28 2 51 50 6 3 14 17 11 8 3 4 2 2 10 12 3 9 4 4 6 8 10 12 11 12 13 15 14 11 12 17 15 18 11 15 13 7 10 9 15 17 13 12 ]
T [ 0 0 18 0 49 6 2 33 1 1 9 4 3 7 9 7 7 6 8 13 9 16 9 5 6 14 11 12 6 7 11 15 8 14 14 8 11 12 7 11 6 9 8 12 17 7 13 10 11 8 ]

Hypothetical CWM

   
A [ -0.07 0.05 -0.11 -0.05 -0.04 0.11 -0.10 -0.03 -0.13 -0.05 -0.01 -0.01 0.05 0.02 0.02 0.01 0.01 ]
C [ 0.25 0.13 0.18 0.26 0.02 -0.03 0.04 0.08 -0.07 -0.06 0.06 0.03 -0.02 0.01 -0.00 -0.01 -0.02 ]
G [ -0.09 0.00 -0.12 -0.05 -0.00 0.09 0.17 -0.03 0.25 0.17 -0.02 0.06 0.07 0.02 0.01 0.02 0.04 ]
T [ -0.10 -0.10 0.08 -0.11 0.17 -0.03 -0.05 0.07 -0.06 -0.01 0.03 -0.03 -0.03 0.01 0.02 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19868

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 110

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages