Detailed information of deep learning profile BP000172.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in nephron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000172.1
Cell line/tissue: nephron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR194WQV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4009 3595 3404 4787 6203 4481 3409 4056 3405 3770 4305 4352 4592 4677 4064 2695 3971 4854 1843 550 11398 1294 2830 14438 232 6839 1299 268 390 2952 7003 1885 2640 6120 3192 5204 3837 4580 3984 3858 4670 5556 3886 4499 4796 5002 4804 4604 4648 4568 ]
C [ 4037 3098 4313 5255 3595 3380 2920 4184 6813 5837 5225 4772 4473 3974 4376 5611 3648 2008 13081 16552 989 9050 6732 439 56 140 650 75 529 12317 1069 8616 5495 4093 3508 3254 3157 4580 5374 6253 5236 3685 4619 4004 3889 3949 3987 4121 4307 4207 ]
G [ 4321 5736 5676 3225 3932 4031 3677 3954 2724 3138 3801 4095 3895 3573 4285 2746 5554 7194 1310 216 2362 6496 1439 1497 17063 10320 9521 16930 15104 639 8262 5011 1837 5160 4591 3750 7141 4569 4495 2820 2990 4491 4571 4690 4416 3946 4009 4672 4558 4539 ]
T [ 5121 5059 4095 4221 3758 5596 7482 5294 4546 4743 4157 4269 4528 5264 4763 6436 4315 3432 1254 170 2739 648 6487 1114 137 189 6018 215 1465 1580 1154 1976 7516 2115 6197 5280 3353 3759 3635 4557 4592 3756 4412 4295 4387 4591 4688 4091 3975 4174 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.09 -0.05 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 -0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.02 0.11 0.05 -0.01 -0.02 -0.07 0.00 -0.04 -0.03 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.06 -0.02 -0.02 0.07 0.05 -0.02 0.02 0.17 0.12 0.09 0.16 0.12 -0.02 0.11 0.05 -0.00 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.06 0.05 -0.03 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2783

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 220

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages