Detailed information of deep learning profile BP000172.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in nephron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000172.1
Cell line/tissue: nephron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR194WQV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4174 3975 4091 4688 4591 4387 4295 4412 3756 4592 4557 3635 3759 3353 5280 6197 2115 7516 1976 1154 1580 1465 215 6018 189 137 1114 6487 648 2739 170 1254 3432 4315 6436 4763 5264 4528 4269 4157 4743 4546 5294 7482 5596 3758 4221 4095 5059 5121 ]
C [ 4539 4558 4672 4009 3946 4416 4690 4571 4491 2990 2820 4495 4569 7141 3750 4591 5160 1837 5011 8262 639 15104 16930 9521 10320 17063 1497 1439 6496 2362 216 1310 7194 5554 2746 4285 3573 3895 4095 3801 3138 2724 3954 3677 4031 3932 3225 5676 5736 4321 ]
G [ 4207 4307 4121 3987 3949 3889 4004 4619 3685 5236 6253 5374 4580 3157 3254 3508 4093 5495 8616 1069 12317 529 75 650 140 56 439 6732 9050 989 16552 13081 2008 3648 5611 4376 3974 4473 4772 5225 5837 6813 4184 2920 3380 3595 5255 4313 3098 4037 ]
T [ 4568 4648 4604 4804 5002 4796 4499 3886 5556 4670 3858 3984 4580 3837 5204 3192 6120 2640 1885 7003 2952 390 268 1299 6839 232 14438 2830 1294 11398 550 1843 4854 3971 2695 4064 4677 4592 4352 4305 3770 3405 4056 3409 4481 6203 4787 3404 3595 4009 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.02 0.00 -0.04 0.02 -0.07 -0.04 -0.03 0.05 -0.06 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.00 0.05 0.11 -0.02 0.12 0.16 0.09 0.12 0.17 0.02 -0.02 0.05 0.07 -0.02 -0.02 0.06 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.03 -0.04 0.00 -0.07 -0.02 -0.01 0.05 0.11 -0.02 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ -0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.05 -0.05 0.09 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2783

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 220

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages