Detailed information of deep learning profile BP000121.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000121.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR035OXA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.01 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.01 -0.00 0.01 0.05 -0.00 0.09 0.16 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.02 -0.00 0.00 ]
G [ 0.00 0.01 0.03 0.00 0.08 0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.05 -0.00 0.17 0.09 0.00 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.01 -0.00 ]

Frequency matrix

       
A [ 22 89 24 10 33 26 5 82 8 3 15 76 17 27 3 16 51 49 89 55 66 57 53 42 54 45 53 86 135 24 40 50 8 153 46 37 52 57 56 63 60 61 52 50 54 53 72 51 54 59 ]
C [ 54 21 51 81 19 139 181 96 112 174 27 13 71 21 2 12 81 77 11 32 26 44 39 61 42 21 40 52 13 69 18 8 176 13 26 63 55 50 56 34 41 42 51 48 46 45 33 46 45 46 ]
G [ 42 60 91 20 105 20 3 3 5 8 5 69 94 10 186 149 17 28 62 60 52 52 58 52 54 94 67 15 24 36 22 118 5 13 88 51 44 56 39 45 58 39 43 33 55 54 43 47 41 41 ]
T [ 82 30 34 89 43 15 11 19 75 15 153 42 18 142 9 23 51 46 38 53 56 47 50 45 50 40 40 47 28 71 120 24 11 21 40 49 49 37 49 58 41 58 54 69 45 48 52 56 60 54 ]

Hypothetical CWM

   
A [ -0.04 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.03 -0.07 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.03 -0.00 0.04 0.12 -0.02 0.12 0.16 0.11 0.12 0.18 0.03 -0.00 0.05 0.07 -0.01 -0.02 0.05 0.04 0.00 0.02 0.01 0.01 0.00 ]
G [ 0.04 0.05 0.07 0.00 0.13 -0.01 -0.02 -0.00 -0.04 -0.02 -0.00 0.05 0.12 -0.01 0.17 0.11 -0.00 0.03 0.04 0.01 0.01 0.01 0.02 ]
T [ 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.07 0.04 -0.04 0.08 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17936

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 780

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 116

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages