Detailed information of deep learning profile BP000121.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000121.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR035OXA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.00 0.00 0.09 0.17 -0.00 0.05 0.01 -0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.03 0.01 0.00 ]
G [ 0.00 -0.00 0.02 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.16 0.09 -0.00 0.05 0.01 -0.00 0.01 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.01 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 54 60 56 52 48 45 69 54 58 41 58 49 37 49 49 40 21 11 24 120 71 28 47 40 40 50 45 50 47 56 53 38 46 51 23 9 142 18 42 153 15 75 19 11 15 43 89 34 30 82 ]
C [ 41 41 47 43 54 55 33 43 39 58 45 39 56 44 51 88 13 5 118 22 36 24 15 67 94 54 52 58 52 52 60 62 28 17 149 186 10 94 69 5 8 5 3 3 20 105 20 91 60 42 ]
G [ 46 45 46 33 45 46 48 51 42 41 34 56 50 55 63 26 13 176 8 18 69 13 52 40 21 42 61 39 44 26 32 11 77 81 12 2 21 71 13 27 174 112 96 181 139 19 81 51 21 54 ]
T [ 59 54 51 72 53 54 50 52 61 60 63 56 57 52 37 46 153 8 50 40 24 135 86 53 45 54 42 53 57 66 55 89 49 51 16 3 27 17 76 15 3 8 82 5 26 33 10 24 89 22 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.08 -0.04 0.04 -0.07 -0.04 -0.05 -0.02 0.02 -0.02 -0.02 0.03 ]
C [ 0.02 0.01 0.01 0.01 0.04 0.03 -0.00 0.11 0.17 -0.01 0.12 0.05 -0.00 -0.02 -0.04 -0.00 -0.02 -0.01 0.13 0.00 0.07 0.05 0.04 ]
G [ 0.00 0.01 0.01 0.02 0.00 0.04 0.05 -0.02 -0.01 0.07 0.05 -0.00 0.03 0.18 0.12 0.11 0.16 0.12 -0.02 0.12 0.04 -0.00 0.03 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.04 -0.07 0.03 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.04 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17936

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 780

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 116

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages