Detailed information of deep learning profile BP000098.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000098.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.15 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.07 0.05 0.13 0.08 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 4882 4535 4075 5576 6867 5222 4051 4869 3994 4525 5124 5179 5163 5293 4730 3378 4717 5812 2242 1162 12043 1929 3367 15502 341 6182 2407 644 1456 4428 7050 2807 3984 6554 4119 5531 4635 5319 4743 4791 5235 5765 4845 5241 5415 5327 5447 5368 5315 5153 ]
C [ 4742 3670 5241 5974 4507 4256 3687 5029 7972 6873 5907 5443 5269 4842 5488 6755 4737 2560 15136 18479 1480 10370 7355 506 119 264 846 489 2351 11816 2697 8708 5938 4681 4259 4167 4290 5136 5734 6468 5651 4730 5101 4805 4827 4926 4966 4954 4983 5049 ]
G [ 5025 6458 6512 3999 4597 4584 4515 4516 3430 3775 4442 4814 4650 4153 4919 3178 6032 8161 1633 441 2699 7246 1986 2612 19725 13475 11048 18528 14546 1738 8751 5488 3086 5780 5423 4812 7386 5399 5378 4192 4368 5236 5306 5247 5284 4988 4818 5243 5398 5206 ]
T [ 5812 5798 4633 4912 4490 6399 8208 6047 5065 5288 4988 5025 5379 6173 5324 7150 4975 3928 1450 379 4239 916 7753 1841 276 540 6160 800 2108 2479 1963 3458 7453 3446 6660 5951 4150 4607 4606 5010 5207 4730 5209 5168 4935 5220 5230 4896 4765 5053 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.03 -0.05 -0.05 -0.04 -0.01 0.01 -0.02 -0.01 0.02 -0.01 0.01 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.03 -0.01 0.11 0.16 -0.02 0.09 0.04 -0.02 -0.03 -0.06 -0.01 -0.04 -0.02 0.09 -0.01 0.05 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.04 -0.03 -0.03 0.05 0.04 -0.02 0.02 0.15 0.11 0.09 0.14 0.10 -0.01 0.09 0.03 -0.00 0.02 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.02 -0.05 0.05 -0.02 -0.04 -0.06 0.01 -0.04 -0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 436

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 156

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages