Detailed information of deep learning profile BP000098.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000098.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.13 0.05 0.07 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.15 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5053 4765 4896 5230 5220 4935 5168 5209 4730 5207 5010 4606 4607 4150 5951 6660 3446 7453 3458 1963 2479 2108 800 6160 540 276 1841 7753 916 4239 379 1450 3928 4975 7150 5324 6173 5379 5025 4988 5288 5065 6047 8208 6399 4490 4912 4633 5798 5812 ]
C [ 5206 5398 5243 4818 4988 5284 5247 5306 5236 4368 4192 5378 5399 7386 4812 5423 5780 3086 5488 8751 1738 14546 18528 11048 13475 19725 2612 1986 7246 2699 441 1633 8161 6032 3178 4919 4153 4650 4814 4442 3775 3430 4516 4515 4584 4597 3999 6512 6458 5025 ]
G [ 5049 4983 4954 4966 4926 4827 4805 5101 4730 5651 6468 5734 5136 4290 4167 4259 4681 5938 8708 2697 11816 2351 489 846 264 119 506 7355 10370 1480 18479 15136 2560 4737 6755 5488 4842 5269 5443 5907 6873 7972 5029 3687 4256 4507 5974 5241 3670 4742 ]
T [ 5153 5315 5368 5447 5327 5415 5241 4845 5765 5235 4791 4743 5319 4635 5531 4119 6554 3984 2807 7050 4428 1456 644 2407 6182 341 15502 3367 1929 12043 1162 2242 5812 4717 3378 4730 5293 5163 5179 5124 4525 3994 4869 4051 5222 6867 5576 4075 4535 4882 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 -0.00 -0.04 0.01 -0.06 -0.04 -0.02 0.05 -0.05 -0.02 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.02 0.02 -0.00 0.03 0.09 -0.01 0.10 0.14 0.09 0.11 0.15 0.02 -0.02 0.04 0.05 -0.03 -0.03 0.04 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 0.05 -0.01 0.09 -0.02 -0.04 -0.01 -0.06 -0.03 -0.02 0.04 0.09 -0.02 0.16 0.11 -0.01 0.03 0.05 0.02 0.01 0.02 0.02 ]
T [ 0.01 -0.01 0.02 -0.01 -0.02 0.01 -0.01 -0.04 -0.05 -0.05 0.03 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.01 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 436

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 156

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages