Detailed information of deep learning profile BP000092.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000092.1
Cell line/tissue: fibroblast of lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DVA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.15 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.16 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5000 4781 4813 5289 5308 5093 5123 5104 4664 5257 5148 4277 4500 4182 6057 6871 3081 7933 2981 1843 2327 1890 735 5289 471 226 1615 7450 869 3818 297 1392 3902 4984 6997 5372 6382 5538 4971 4836 5349 5008 6084 8433 6232 4349 4872 4590 5946 5821 ]
C [ 5379 5515 5534 5135 5080 5353 5581 5528 5471 4341 4034 5550 5638 7887 4845 5498 6218 2951 5683 9627 1689 15580 18950 12083 13578 20072 2491 1912 7499 3403 356 1732 8547 6408 3327 5186 4355 4764 4880 4562 3919 3543 4828 4541 5054 4873 4021 6942 6691 5156 ]
G [ 5191 5184 5151 5039 4919 4886 4956 5411 4723 6034 6822 6232 5345 4269 4317 4515 4893 6315 9453 2325 12517 2070 505 1048 318 152 583 7988 10647 1419 19091 15406 2581 4754 7262 5749 4884 5420 5589 6461 7096 8356 5091 3821 4324 4432 6497 5285 3860 5004 ]
T [ 5278 5368 5350 5385 5541 5516 5188 4805 5990 5216 4844 4789 5365 4510 5629 3964 6656 3649 2731 7053 4315 1308 658 2428 6481 398 16159 3498 1833 12208 1104 2318 5818 4702 3262 4541 5227 5126 5408 4989 4484 3941 4845 4053 5238 7194 5458 4031 4351 4867 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.03 -0.00 -0.04 0.01 -0.06 -0.04 -0.03 0.06 -0.05 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 0.00 0.04 0.11 -0.01 0.12 0.16 0.10 0.12 0.17 0.03 -0.01 0.05 0.07 -0.02 -0.02 0.06 0.04 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.03 0.00 -0.06 -0.03 -0.01 0.05 0.11 -0.01 0.17 0.12 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.01 -0.02 0.01 -0.01 -0.05 -0.05 -0.05 0.04 -0.05 0.09 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 147

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages