Detailed information of deep learning profile BP000092.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000092.1
Cell line/tissue: fibroblast of lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DVA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.15 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4867 4351 4031 5458 7194 5238 4053 4845 3941 4484 4989 5408 5126 5227 4541 3262 4702 5818 2318 1104 12208 1833 3498 16159 398 6481 2428 658 1308 4315 7053 2731 3649 6656 3964 5629 4510 5365 4789 4844 5216 5990 4805 5188 5516 5541 5385 5350 5368 5278 ]
C [ 5004 3860 5285 6497 4432 4324 3821 5091 8356 7096 6461 5589 5420 4884 5749 7262 4754 2581 15406 19091 1419 10647 7988 583 152 318 1048 505 2070 12517 2325 9453 6315 4893 4515 4317 4269 5345 6232 6822 6034 4723 5411 4956 4886 4919 5039 5151 5184 5191 ]
G [ 5156 6691 6942 4021 4873 5054 4541 4828 3543 3919 4562 4880 4764 4355 5186 3327 6408 8547 1732 356 3403 7499 1912 2491 20072 13578 12083 18950 15580 1689 9627 5683 2951 6218 5498 4845 7887 5638 5550 4034 4341 5471 5528 5581 5353 5080 5135 5534 5515 5379 ]
T [ 5821 5946 4590 4872 4349 6232 8433 6084 5008 5349 4836 4971 5538 6382 5372 6997 4984 3902 1392 297 3818 869 7450 1615 226 471 5289 735 1890 2327 1843 2981 7933 3081 6871 6057 4182 4500 4277 5148 5257 4664 5104 5123 5093 5308 5289 4813 4781 5000 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.09 -0.05 0.04 -0.05 -0.05 -0.05 -0.01 0.01 -0.02 -0.01 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.12 0.17 -0.01 0.11 0.05 -0.01 -0.03 -0.06 0.00 -0.03 -0.02 0.11 -0.01 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.04 0.06 -0.02 -0.02 0.07 0.05 -0.01 0.03 0.17 0.12 0.10 0.16 0.12 -0.01 0.11 0.04 0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.02 -0.05 0.06 -0.03 -0.04 -0.06 0.01 -0.04 -0.00 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 147

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages