Detailed information of deep learning profile BP000091.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of pulmonary artery using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000091.1
Cell line/tissue: fibroblast of pulmonary artery
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUX
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.21 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.21 0.10 0.07 0.20 0.12 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4647 4203 3964 5289 6990 5157 3888 4643 3750 4359 4845 5160 4964 5062 4392 3112 4578 5568 2228 1158 11647 1817 3399 15709 400 6295 2422 644 1320 4296 6846 2682 3700 6382 3907 5534 4362 5256 4666 4726 5093 5663 4682 5132 5424 5341 5252 5183 5209 5177 ]
C [ 4877 3788 5077 6322 4372 4197 3648 4847 8342 6970 6145 5372 5222 4811 5618 7073 4649 2484 14969 18394 1433 10271 7756 595 124 324 977 494 2002 11950 2332 9103 5990 4659 4270 4119 4246 5158 5911 6570 5815 4680 5178 4774 4715 4781 4857 4916 5011 4976 ]
G [ 5025 6338 6742 3844 4520 4776 4411 4732 3294 3739 4451 4869 4672 4167 4977 3201 6130 8344 1655 385 3294 7327 1798 2364 19464 13134 11706 18372 15075 1679 9220 5446 2856 6023 5361 4788 7635 5472 5403 4005 4271 5237 5398 5415 5271 5030 4953 5422 5414 5241 ]
T [ 5696 5916 4462 4790 4363 6115 8298 6023 4859 5177 4804 4844 5387 6205 5258 6859 4888 3849 1393 308 3871 830 7292 1577 257 492 5140 735 1848 2320 1847 3014 7699 3181 6707 5804 4002 4359 4265 4944 5066 4665 4987 4924 4835 5093 5183 4724 4611 4851 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.11 -0.06 0.05 -0.07 -0.07 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.07 0.05 -0.01 0.15 0.22 -0.02 0.14 0.06 -0.02 -0.05 -0.09 -0.01 -0.05 -0.03 0.13 -0.01 0.07 0.05 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.05 0.07 -0.03 -0.04 0.07 0.05 -0.03 0.03 0.22 0.16 0.13 0.21 0.15 -0.01 0.14 0.05 -0.00 0.03 0.02 0.01 0.05 0.02 ]
T [ 0.00 0.01 0.02 0.00 0.02 -0.01 -0.02 -0.05 -0.10 -0.03 -0.07 0.07 -0.03 -0.05 -0.07 0.02 -0.05 0.00 -0.03 -0.06 -0.01 0.03 -0.03 0.03 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages