Detailed information of deep learning profile BP000091.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of pulmonary artery using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000091.1
Cell line/tissue: fibroblast of pulmonary artery
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUX
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.12 0.20 0.07 0.10 0.21 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.21 0.11 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4851 4611 4724 5183 5093 4835 4924 4987 4665 5066 4944 4265 4359 4002 5804 6707 3181 7699 3014 1847 2320 1848 735 5140 492 257 1577 7292 830 3871 308 1393 3849 4888 6859 5258 6205 5387 4844 4804 5177 4859 6023 8298 6115 4363 4790 4462 5916 5696 ]
C [ 5241 5414 5422 4953 5030 5271 5415 5398 5237 4271 4005 5403 5472 7635 4788 5361 6023 2856 5446 9220 1679 15075 18372 11706 13134 19464 2364 1798 7327 3294 385 1655 8344 6130 3201 4977 4167 4672 4869 4451 3739 3294 4732 4411 4776 4520 3844 6742 6338 5025 ]
G [ 4976 5011 4916 4857 4781 4715 4774 5178 4680 5815 6570 5911 5158 4246 4119 4270 4659 5990 9103 2332 11950 2002 494 977 324 124 595 7756 10271 1433 18394 14969 2484 4649 7073 5618 4811 5222 5372 6145 6970 8342 4847 3648 4197 4372 6322 5077 3788 4877 ]
T [ 5177 5209 5183 5252 5341 5424 5132 4682 5663 5093 4726 4666 5256 4362 5534 3907 6382 3700 2682 6846 4296 1320 644 2422 6295 400 15709 3399 1817 11647 1158 2228 5568 4578 3112 4392 5062 4964 5160 4845 4359 3750 4643 3888 5157 6990 5289 3964 4203 4647 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.03 0.03 -0.01 -0.06 -0.03 0.00 -0.05 0.02 -0.07 -0.05 -0.03 0.07 -0.07 -0.03 -0.10 -0.05 -0.02 -0.01 0.02 0.00 0.02 0.01 0.00 ]
C [ 0.02 0.05 0.01 0.02 0.03 -0.00 0.05 0.14 -0.01 0.15 0.21 0.13 0.16 0.22 0.03 -0.03 0.05 0.07 -0.04 -0.03 0.07 0.05 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.05 0.07 -0.01 0.13 -0.03 -0.05 -0.01 -0.09 -0.05 -0.02 0.06 0.14 -0.02 0.22 0.15 -0.01 0.05 0.07 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.07 -0.07 0.05 -0.06 0.11 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages