Detailed information of deep learning profile BP000081.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000081.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTO
Model: BPNet
Download trained model
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.13 0.05 0.08 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.15 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4809 4526 4717 5013 4876 4830 4858 4909 4517 4948 4753 4245 4359 3898 5727 6325 3160 7354 3115 1845 2452 2009 804 5428 515 254 1589 7369 821 3923 322 1257 3797 4863 6970 5116 5900 5210 4710 4679 5020 4660 5903 7911 5869 4072 4593 4320 5683 5511 ]
C [ 5051 5229 5154 4838 4924 5158 5057 5208 5105 4318 4085 5356 5228 7283 4601 5247 5676 2984 5305 8487 1766 14131 17665 11133 13381 18930 2372 1774 6881 2460 473 1488 7832 5958 3122 4638 4070 4521 4557 4201 3542 3320 4398 4374 4625 4435 3732 6694 6268 5017 ]
G [ 4853 4893 4671 4772 4807 4570 4747 4903 4568 5397 6153 5456 4982 4222 4033 4173 4573 5765 8537 2576 11372 2161 570 892 229 159 482 7401 10185 1569 17792 14828 2453 4567 6578 5422 4683 5221 5298 6018 6961 8021 4652 3528 4090 4403 6087 4891 3674 4605 ]
T [ 4972 5037 5143 5062 5078 5127 5023 4665 5495 5022 4694 4628 5116 4282 5324 3940 6276 3582 2728 6777 4095 1384 646 2232 5560 342 15242 3141 1798 11733 1098 2112 5603 4297 3015 4509 5032 4733 5120 4787 4162 3684 4732 3872 5101 6775 5273 3780 4060 4552 ]

Hypothetical CWM

   
A [ 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.02 -0.00 -0.04 0.01 -0.06 -0.04 -0.03 0.06 -0.06 -0.02 -0.08 -0.04 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.02 0.02 -0.01 0.03 0.10 -0.01 0.10 0.14 0.10 0.12 0.16 0.02 -0.02 0.04 0.05 -0.03 -0.03 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 0.05 -0.02 0.09 -0.02 -0.04 -0.01 -0.06 -0.03 -0.02 0.04 0.10 -0.03 0.16 0.11 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.02 0.02 -0.02 -0.02 0.01 -0.01 -0.05 -0.05 -0.05 0.03 -0.06 0.09 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 -0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages