Detailed information of deep learning profile BP000081.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000081.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTO
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.15 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.08 0.05 0.13 0.08 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4552 4060 3780 5273 6775 5101 3872 4732 3684 4162 4787 5120 4733 5032 4509 3015 4297 5603 2112 1098 11733 1798 3141 15242 342 5560 2232 646 1384 4095 6777 2728 3582 6276 3940 5324 4282 5116 4628 4694 5022 5495 4665 5023 5127 5078 5062 5143 5037 4972 ]
C [ 4605 3674 4891 6087 4403 4090 3528 4652 8021 6961 6018 5298 5221 4683 5422 6578 4567 2453 14828 17792 1569 10185 7401 482 159 229 892 570 2161 11372 2576 8537 5765 4573 4173 4033 4222 4982 5456 6153 5397 4568 4903 4747 4570 4807 4772 4671 4893 4853 ]
G [ 5017 6268 6694 3732 4435 4625 4374 4398 3320 3542 4201 4557 4521 4070 4638 3122 5958 7832 1488 473 2460 6881 1774 2372 18930 13381 11133 17665 14131 1766 8487 5305 2984 5676 5247 4601 7283 5228 5356 4085 4318 5105 5208 5057 5158 4924 4838 5154 5229 5051 ]
T [ 5511 5683 4320 4593 4072 5869 7911 5903 4660 5020 4679 4710 5210 5900 5116 6970 4863 3797 1257 322 3923 821 7369 1589 254 515 5428 804 2009 2452 1845 3115 7354 3160 6325 5727 3898 4359 4245 4753 4948 4517 4909 4858 4830 4876 5013 4717 4526 4809 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.09 -0.06 0.03 -0.05 -0.05 -0.05 -0.01 0.01 -0.02 -0.02 0.02 -0.02 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.11 0.16 -0.03 0.10 0.04 -0.02 -0.03 -0.06 -0.01 -0.04 -0.02 0.09 -0.02 0.05 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.03 -0.03 0.05 0.04 -0.02 0.02 0.16 0.12 0.10 0.14 0.10 -0.01 0.10 0.03 -0.01 0.02 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.04 -0.08 -0.02 -0.06 0.06 -0.03 -0.04 -0.06 0.01 -0.04 -0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages