Detailed information of deep learning profile BP000072.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12874 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000072.1
Cell line/tissue: GM12874
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.12 0.20 0.07 0.09 0.21 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.21 0.11 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4614 4605 4530 5228 5148 4784 4870 4882 4262 5025 4877 4179 4366 3796 5853 6978 2811 8072 2674 1534 2219 1879 486 6138 389 224 1635 7685 780 3483 250 1322 3592 4673 7073 5215 5922 5095 4778 4619 5195 4972 5966 8162 6139 4124 4562 4492 5656 5705 ]
C [ 5289 5270 5335 4721 4703 5120 5332 5329 5276 3983 3783 5171 5316 7733 4490 5046 5652 2471 5223 9185 1469 15240 18680 11387 12771 19218 2424 1956 7008 2699 358 1526 8291 6334 3237 4889 4299 4595 4701 4435 3694 3278 4490 4480 4783 4737 3723 6687 6735 5077 ]
G [ 5022 5036 4912 4826 4790 4684 4883 5211 4425 5959 6810 5921 5303 3932 4072 4168 4916 6134 9669 2203 12818 1818 328 834 234 158 611 7041 10610 1472 18660 15064 2466 4507 6517 5276 4743 5188 5501 6011 6926 7986 4762 3492 4101 4245 6253 5024 3554 4691 ]
T [ 4998 5012 5146 5148 5282 5335 4838 4501 5960 4956 4453 4652 4938 4462 5508 3731 6544 3246 2357 7001 3417 986 429 1564 6529 323 15253 3241 1525 12269 655 2011 5574 4409 3096 4543 4959 5045 4943 4858 4108 3687 4705 3789 4900 6817 5385 3720 3978 4450 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.03 0.00 -0.05 0.02 -0.08 -0.05 -0.03 0.07 -0.07 -0.03 -0.11 -0.05 -0.03 -0.01 0.02 0.00 0.01 0.00 ]
C [ 0.02 0.04 0.01 0.03 0.03 -0.01 0.05 0.14 -0.01 0.14 0.21 0.13 0.16 0.22 0.03 -0.01 0.06 0.09 -0.02 -0.03 0.07 0.05 -0.00 0.02 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.05 0.08 -0.01 0.14 -0.03 -0.04 -0.00 -0.07 -0.02 0.00 0.06 0.14 -0.02 0.22 0.15 -0.01 0.05 0.06 0.02 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.08 -0.08 0.04 -0.06 0.10 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.03 -0.03 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 665

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 282

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 32

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages