Detailed information of deep learning profile BP000072.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12874 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000072.1
Cell line/tissue: GM12874
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.11 0.21 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.21 0.09 0.07 0.20 0.12 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4450 3978 3720 5385 6817 4900 3789 4705 3687 4108 4858 4943 5045 4959 4543 3096 4409 5574 2011 655 12269 1525 3241 15253 323 6529 1564 429 986 3417 7001 2357 3246 6544 3731 5508 4462 4938 4652 4453 4956 5960 4501 4838 5335 5282 5148 5146 5012 4998 ]
C [ 4691 3554 5024 6253 4245 4101 3492 4762 7986 6926 6011 5501 5188 4743 5276 6517 4507 2466 15064 18660 1472 10610 7041 611 158 234 834 328 1818 12818 2203 9669 6134 4916 4168 4072 3932 5303 5921 6810 5959 4425 5211 4883 4684 4790 4826 4912 5036 5022 ]
G [ 5077 6735 6687 3723 4737 4783 4480 4490 3278 3694 4435 4701 4595 4299 4889 3237 6334 8291 1526 358 2699 7008 1956 2424 19218 12771 11387 18680 15240 1469 9185 5223 2471 5652 5046 4490 7733 5316 5171 3783 3983 5276 5329 5332 5120 4703 4721 5335 5270 5289 ]
T [ 5705 5656 4492 4562 4124 6139 8162 5966 4972 5195 4619 4778 5095 5922 5215 7073 4673 3592 1322 250 3483 780 7685 1635 224 389 6138 486 1879 2219 1534 2674 8072 2811 6978 5853 3796 4366 4179 4877 5025 4262 4882 4870 4784 5148 5228 4530 4605 4614 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.03 -0.03 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.10 -0.06 0.04 -0.08 -0.08 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.02 0.06 0.05 -0.01 0.15 0.22 -0.02 0.14 0.06 0.00 -0.02 -0.07 -0.00 -0.04 -0.03 0.14 -0.01 0.08 0.05 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.02 -0.00 0.05 0.07 -0.03 -0.02 0.09 0.06 -0.01 0.03 0.22 0.16 0.13 0.21 0.14 -0.01 0.14 0.05 -0.01 0.03 0.03 0.01 0.04 0.02 ]
T [ 0.00 0.01 0.00 0.02 -0.01 -0.03 -0.05 -0.11 -0.03 -0.07 0.07 -0.03 -0.05 -0.08 0.02 -0.05 0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 665

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 282

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 32

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages