Detailed information of deep learning profile BP000064.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in BJ using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000064.1
Cell line/tissue: BJ
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DQI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.21 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.21 0.09 0.07 0.19 0.12 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5420 4822 4578 6118 7863 5860 4622 5356 4486 5005 5606 5990 5620 5749 5020 3632 5157 6362 2511 1279 13417 2094 3835 18371 355 7323 2708 710 1407 4730 7883 2964 4056 7481 4439 6315 5030 5928 5266 5296 5821 6551 5336 5737 6025 6114 5943 5915 5992 5788 ]
C [ 5755 4665 6193 7355 5196 4994 4358 5772 9315 8128 7264 6481 6165 5682 6789 8201 5467 3007 17482 21440 1831 12074 9184 739 120 342 1179 527 2159 14546 2604 10893 7153 5587 5098 4857 4876 6191 7063 7890 6878 5579 6167 5783 5691 5738 5751 5849 6033 6065 ]
G [ 5967 7589 7692 4731 5665 5763 5498 5702 4164 4632 5327 5717 5531 5097 5811 3852 7307 9796 1990 507 4053 8539 2378 2626 22900 15470 13588 21707 18024 1823 11157 6485 3404 7121 6370 5626 9140 6486 6473 4766 5070 6310 6460 6513 6356 5917 5979 6510 6287 6230 ]
T [ 6461 6527 5140 5399 4879 6986 9125 6773 5638 5838 5406 5415 6287 7075 5983 7918 5672 4438 1620 377 4302 896 8206 1867 228 468 6128 659 2013 2504 1959 3261 8990 3414 7696 6805 4557 4998 4801 5651 5834 5163 5640 5570 5531 5834 5930 5329 5291 5520 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.04 -0.03 0.11 -0.07 0.05 -0.06 -0.06 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.07 0.05 -0.01 0.15 0.22 -0.01 0.14 0.07 -0.01 -0.02 -0.08 -0.00 -0.05 -0.03 0.13 -0.01 0.07 0.05 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.07 -0.03 -0.03 0.08 0.06 -0.02 0.03 0.22 0.15 0.12 0.20 0.14 -0.01 0.14 0.05 -0.00 0.03 0.03 0.01 0.05 0.02 ]
T [ 0.00 0.01 0.02 0.01 0.03 -0.01 -0.02 -0.05 -0.10 -0.03 -0.07 0.07 -0.04 -0.05 -0.08 0.02 -0.06 -0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 241

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages