Detailed information of deep learning profile BP000064.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in BJ using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000064.1
Cell line/tissue: BJ
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DQI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.12 0.19 0.07 0.09 0.21 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.21 0.11 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5520 5291 5329 5930 5834 5531 5570 5640 5163 5834 5651 4801 4998 4557 6805 7696 3414 8990 3261 1959 2504 2013 659 6128 468 228 1867 8206 896 4302 377 1620 4438 5672 7918 5983 7075 6287 5415 5406 5838 5638 6773 9125 6986 4879 5399 5140 6527 6461 ]
C [ 6230 6287 6510 5979 5917 6356 6513 6460 6310 5070 4766 6473 6486 9140 5626 6370 7121 3404 6485 11157 1823 18024 21707 13588 15470 22900 2626 2378 8539 4053 507 1990 9796 7307 3852 5811 5097 5531 5717 5327 4632 4164 5702 5498 5763 5665 4731 7692 7589 5967 ]
G [ 6065 6033 5849 5751 5738 5691 5783 6167 5579 6878 7890 7063 6191 4876 4857 5098 5587 7153 10893 2604 14546 2159 527 1179 342 120 739 9184 12074 1831 21440 17482 3007 5467 8201 6789 5682 6165 6481 7264 8128 9315 5772 4358 4994 5196 7355 6193 4665 5755 ]
T [ 5788 5992 5915 5943 6114 6025 5737 5336 6551 5821 5296 5266 5928 5030 6315 4439 7481 4056 2964 7883 4730 1407 710 2708 7323 355 18371 3835 2094 13417 1279 2511 6362 5157 3632 5020 5749 5620 5990 5606 5005 4486 5356 4622 5860 7863 6118 4578 4822 5420 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.03 -0.00 -0.06 0.02 -0.08 -0.05 -0.04 0.07 -0.07 -0.03 -0.10 -0.05 -0.02 -0.01 0.03 0.01 0.02 0.01 0.00 ]
C [ 0.02 0.05 0.01 0.03 0.03 -0.00 0.05 0.14 -0.01 0.14 0.20 0.12 0.15 0.22 0.03 -0.02 0.06 0.08 -0.03 -0.03 0.07 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.05 0.07 -0.01 0.13 -0.03 -0.05 -0.00 -0.08 -0.02 -0.01 0.07 0.14 -0.01 0.22 0.15 -0.01 0.05 0.07 0.03 0.02 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.06 -0.06 0.05 -0.07 0.11 -0.03 -0.04 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 241

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages