Detailed information of deep learning profile BP000040.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in endothelial cell of umbilical vein using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000040.1
Cell line/tissue: endothelial cell of umbilical vein
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.20 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.22 0.10 0.07 0.22 0.15 -0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4864 4520 4356 5578 6768 5273 4228 4869 4291 4504 5138 5112 5200 5419 4837 3443 4775 5665 2565 921 12506 2099 3657 16289 394 7011 1987 381 719 3591 7747 2118 3384 7021 3767 5917 4504 5453 4635 4710 5394 6325 4577 5238 5537 5705 5490 5394 5295 5389 ]
C [ 4993 4207 5326 6199 4588 4532 3958 5244 7739 7047 6287 5986 5683 5148 5596 6976 4657 2708 14977 19434 1582 10230 7745 586 119 136 726 95 1130 14586 1561 10812 6848 5089 4399 4241 4119 5525 6534 7565 6438 4652 5642 5140 4859 5034 5085 5193 5346 5335 ]
G [ 5387 6711 6560 4245 5081 5003 4935 4924 3820 4178 4789 5008 4923 4475 5373 3471 6687 8739 1881 440 3128 7842 2053 2359 20368 13709 12017 20355 17513 979 10353 5462 2163 6221 5408 4662 8421 5628 5611 3680 3910 5522 5725 5706 5612 4967 5020 5678 5718 5481 ]
T [ 5899 5705 4901 5121 4706 6335 8022 6106 5293 5414 4929 5037 5337 6101 5337 7253 5024 4031 1720 348 3927 972 7688 1909 262 287 6413 312 1781 1987 1482 2751 8748 2812 7569 6323 4099 4537 4363 5188 5401 4644 5199 5059 5135 5437 5548 4878 4784 4938 ]

Hypothetical CWM

   
A [ 0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.05 -0.03 -0.02 0.11 -0.05 0.06 -0.08 -0.08 -0.07 -0.02 0.03 -0.02 -0.02 0.04 -0.02 0.02 -0.00 0.01 ]
C [ 0.02 0.06 0.04 -0.01 0.14 0.22 -0.01 0.14 0.07 -0.01 -0.03 -0.08 0.00 -0.03 -0.04 0.16 -0.01 0.09 0.06 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.02 0.00 0.05 0.07 -0.03 -0.03 0.08 0.06 -0.01 0.04 0.22 0.18 0.14 0.22 0.17 -0.02 0.16 0.05 -0.02 0.03 0.02 0.00 0.05 0.02 ]
T [ 0.01 0.03 -0.00 -0.02 -0.05 -0.09 -0.03 -0.06 0.07 -0.02 -0.05 -0.09 0.03 -0.05 0.01 -0.03 -0.07 -0.01 0.04 -0.05 0.04 0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 326

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 244

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 209

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages