Detailed information of deep learning profile BP000040.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in endothelial cell of umbilical vein using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000040.1
Cell line/tissue: endothelial cell of umbilical vein
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 -0.00 0.15 0.22 0.07 0.10 0.22 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.20 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4938 4784 4878 5548 5437 5135 5059 5199 4644 5401 5188 4363 4537 4099 6323 7569 2812 8748 2751 1482 1987 1781 312 6413 287 262 1909 7688 972 3927 348 1720 4031 5024 7253 5337 6101 5337 5037 4929 5414 5293 6106 8022 6335 4706 5121 4901 5705 5899 ]
C [ 5481 5718 5678 5020 4967 5612 5706 5725 5522 3910 3680 5611 5628 8421 4662 5408 6221 2163 5462 10353 979 17513 20355 12017 13709 20368 2359 2053 7842 3128 440 1881 8739 6687 3471 5373 4475 4923 5008 4789 4178 3820 4924 4935 5003 5081 4245 6560 6711 5387 ]
G [ 5335 5346 5193 5085 5034 4859 5140 5642 4652 6438 7565 6534 5525 4119 4241 4399 5089 6848 10812 1561 14586 1130 95 726 136 119 586 7745 10230 1582 19434 14977 2708 4657 6976 5596 5148 5683 5986 6287 7047 7739 5244 3958 4532 4588 6199 5326 4207 4993 ]
T [ 5389 5295 5394 5490 5705 5537 5238 4577 6325 5394 4710 4635 5453 4504 5917 3767 7021 3384 2118 7747 3591 719 381 1987 7011 394 16289 3657 2099 12506 921 2565 5665 4775 3443 4837 5419 5200 5112 5138 4504 4291 4869 4228 5273 6768 5578 4356 4520 4864 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.02 0.04 -0.05 0.04 -0.01 -0.07 -0.03 0.01 -0.05 0.03 -0.09 -0.05 -0.02 0.07 -0.06 -0.03 -0.09 -0.05 -0.02 -0.00 0.03 0.01 ]
C [ 0.02 0.05 0.00 0.02 0.03 -0.02 0.05 0.16 -0.02 0.17 0.22 0.14 0.18 0.22 0.04 -0.01 0.06 0.08 -0.03 -0.03 0.07 0.05 0.00 0.02 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.06 0.09 -0.01 0.16 -0.04 -0.03 0.00 -0.08 -0.03 -0.01 0.07 0.14 -0.01 0.22 0.14 -0.01 0.04 0.06 0.02 ]
T [ 0.01 -0.00 0.02 -0.02 0.04 -0.02 -0.02 0.03 -0.02 -0.07 -0.08 -0.08 0.06 -0.05 0.11 -0.02 -0.03 0.05 -0.04 -0.01 0.02 -0.02 -0.03 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 326

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 244

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 209

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages