Detailed information of deep learning profile BP000031.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM10248 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000031.1
Cell line/tissue: GM10248
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.01 0.02 -0.00 -0.01 -0.01 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.01 -0.00 0.02 0.05 0.00 0.12 0.21 0.08 0.07 0.23 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.02 -0.00 0.00 ]
G [ 0.01 0.01 0.04 0.00 0.11 0.00 0.00 -0.00 0.00 0.00 -0.00 0.01 0.07 0.00 0.22 0.11 -0.00 0.00 0.02 0.00 ]
T [ 0.01 -0.00 -0.01 0.01 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 41 138 28 36 29 26 6 101 5 2 23 113 19 32 2 20 45 56 106 66 88 66 40 40 75 70 62 124 168 46 55 70 4 179 48 60 85 76 72 75 73 84 73 59 78 62 77 58 76 71 ]
C [ 61 14 71 87 20 182 233 131 115 236 31 12 71 25 4 19 88 94 37 36 37 45 72 101 62 33 24 59 8 61 22 5 233 11 42 88 64 47 54 61 58 64 43 77 62 67 49 78 50 55 ]
G [ 54 69 118 20 164 33 2 4 1 1 5 73 138 15 228 184 47 35 73 82 63 58 84 42 65 126 113 23 45 53 30 164 8 10 131 60 36 73 74 54 50 53 66 43 50 58 51 47 46 46 ]
T [ 92 27 31 105 35 7 7 12 127 9 189 50 20 176 14 25 68 63 32 64 60 79 52 65 46 19 49 42 27 88 141 9 3 48 27 40 63 52 48 58 67 47 66 69 58 61 71 65 76 76 ]

Hypothetical CWM

   
A [ -0.05 0.03 -0.02 -0.07 -0.04 0.01 -0.04 0.04 -0.10 -0.04 -0.04 0.08 -0.07 -0.03 -0.09 -0.04 -0.03 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.04 -0.01 0.06 0.17 -0.01 0.16 0.21 0.15 0.17 0.24 0.04 0.00 0.08 0.09 -0.04 -0.04 0.07 0.06 0.00 0.03 0.01 0.03 0.01 ]
G [ 0.04 0.05 0.09 -0.01 0.17 -0.01 -0.05 -0.03 -0.09 -0.04 0.00 0.05 0.15 -0.03 0.24 0.15 -0.02 0.04 0.07 0.02 0.01 0.01 0.04 ]
T [ 0.04 -0.02 -0.03 0.03 -0.02 -0.07 -0.05 -0.08 0.06 -0.07 0.12 -0.01 -0.03 0.05 -0.04 -0.01 0.04 -0.02 -0.04 -0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19911

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 965

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 119

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages