Detailed information of deep learning profile BP000011.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in myotube using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000011.1
Cell line/tissue: myotube
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ANS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.16 0.06 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5011 4833 4830 5348 5217 5085 5129 5234 4645 5275 5113 4338 4468 4125 6024 6941 3129 8164 3049 1802 2316 1929 626 5760 451 267 1681 7520 841 3786 214 1399 4078 5014 7254 5459 6484 5527 4829 4752 5413 5120 6268 8576 6376 4453 4918 4703 5961 5966 ]
C [ 5423 5608 5577 5114 5114 5477 5701 5564 5485 4271 3915 5625 5708 8051 4951 5636 6248 2799 5610 9637 1574 15879 19320 12219 13412 20280 2533 1858 7780 2720 262 1603 8633 6574 3293 5106 4362 4899 5065 4716 4010 3505 4825 4646 4955 4831 3956 6904 6814 5274 ]
G [ 5325 5266 5266 5039 5091 4931 4966 5499 4898 6041 7144 6382 5365 4239 4249 4437 4798 6421 9708 2261 12887 2054 397 896 261 82 555 8161 10699 1454 19867 15797 2668 4707 7166 5837 4814 5429 5716 6401 7177 8433 5140 3762 4373 4554 6483 5412 3931 4954 ]
T [ 5232 5284 5318 5490 5569 5498 5195 4694 5963 5404 4819 4646 5450 4576 5767 3977 6816 3607 2624 7291 4214 1129 648 2116 6867 362 16222 3452 1671 13031 648 2192 5612 4696 3278 4589 5331 5136 5381 5122 4391 3933 4758 4007 5287 7153 5634 3972 4285 4797 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 -0.00 -0.04 0.02 -0.06 -0.04 -0.03 0.06 -0.05 -0.02 -0.09 -0.05 -0.01 -0.00 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.05 0.12 -0.01 0.12 0.17 0.10 0.13 0.18 0.03 -0.01 0.06 0.07 -0.03 -0.02 0.06 0.04 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.04 0.00 -0.06 -0.03 -0.00 0.06 0.12 -0.02 0.19 0.12 -0.01 0.04 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.02 0.02 -0.01 -0.05 -0.06 -0.06 0.04 -0.05 0.09 -0.01 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 717

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 51

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages