Detailed information of deep learning profile BP000011.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in myotube using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000011.1
Cell line/tissue: myotube
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ANS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.06 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4797 4285 3972 5634 7153 5287 4007 4758 3933 4391 5122 5381 5136 5331 4589 3278 4696 5612 2192 648 13031 1671 3452 16222 362 6867 2116 648 1129 4214 7291 2624 3607 6816 3977 5767 4576 5450 4646 4819 5404 5963 4694 5195 5498 5569 5490 5318 5284 5232 ]
C [ 4954 3931 5412 6483 4554 4373 3762 5140 8433 7177 6401 5716 5429 4814 5837 7166 4707 2668 15797 19867 1454 10699 8161 555 82 261 896 397 2054 12887 2261 9708 6421 4798 4437 4249 4239 5365 6382 7144 6041 4898 5499 4966 4931 5091 5039 5266 5266 5325 ]
G [ 5274 6814 6904 3956 4831 4955 4646 4825 3505 4010 4716 5065 4899 4362 5106 3293 6574 8633 1603 262 2720 7780 1858 2533 20280 13412 12219 19320 15879 1574 9637 5610 2799 6248 5636 4951 8051 5708 5625 3915 4271 5485 5564 5701 5477 5114 5114 5577 5608 5423 ]
T [ 5966 5961 4703 4918 4453 6376 8576 6268 5120 5413 4752 4829 5527 6484 5459 7254 5014 4078 1399 214 3786 841 7520 1681 267 451 5760 626 1929 2316 1802 3049 8164 3129 6941 6024 4125 4468 4338 5113 5275 4645 5234 5129 5085 5217 5348 4830 4833 5011 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.01 0.09 -0.05 0.04 -0.06 -0.06 -0.05 -0.01 0.02 -0.02 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.04 -0.01 0.12 0.19 -0.02 0.12 0.06 -0.00 -0.03 -0.06 0.00 -0.04 -0.02 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.04 0.06 -0.02 -0.03 0.07 0.06 -0.01 0.03 0.18 0.13 0.10 0.17 0.12 -0.01 0.12 0.05 -0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.05 -0.09 -0.02 -0.05 0.06 -0.03 -0.04 -0.06 0.02 -0.04 -0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 717

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 51

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages