Detailed information of deep learning profile BP000002.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000002.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AKB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.11 0.17 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4626 4454 4548 5096 5031 4766 4736 4889 4276 4972 4940 4028 4266 3794 5665 6798 2863 7905 2701 1602 2188 1892 519 6026 386 249 1707 7487 911 3603 304 1379 3742 4670 6889 5035 5803 5115 4687 4731 5009 4833 5799 7925 6042 4246 4680 4551 5547 5670 ]
C [ 5088 5155 5174 4716 4713 5054 5240 5165 5042 3777 3516 5123 5187 7594 4476 5069 5478 2401 5326 8816 1451 14827 18262 10923 12559 18789 2385 1965 6831 2808 395 1642 8015 5993 3163 4837 4202 4386 4606 4287 3666 3296 4474 4364 4645 4531 3697 6265 6434 4821 ]
G [ 4811 4967 4760 4642 4610 4516 4657 5160 4375 5818 6670 5851 5043 3847 3927 3978 4659 5994 9341 2041 12529 1817 278 835 251 114 613 6860 10143 1525 18017 14439 2387 4398 6293 5194 4554 5156 5450 5818 6752 7689 4787 3524 3987 4181 5923 4932 3625 4622 ]
T [ 5028 4977 5071 5099 5199 5217 4920 4339 5860 4986 4427 4551 5057 4318 5485 3708 6553 3253 2185 7094 3385 1017 494 1769 6357 401 14848 3241 1668 11617 837 2093 5409 4492 3208 4487 4994 4896 4810 4717 4126 3735 4493 3740 4879 6595 5253 3805 3947 4440 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 0.00 -0.05 0.02 -0.07 -0.05 -0.04 0.06 -0.06 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.04 0.01 0.02 0.03 -0.00 0.05 0.13 -0.01 0.13 0.18 0.11 0.13 0.19 0.03 -0.01 0.05 0.07 -0.03 -0.02 0.06 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.04 -0.00 -0.07 -0.03 -0.01 0.05 0.12 -0.02 0.19 0.12 -0.01 0.04 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.05 -0.07 0.04 -0.06 0.09 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 477

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages