Detailed information of deep learning profile BP000002.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000002.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AKB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.17 0.11 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4440 3947 3805 5253 6595 4879 3740 4493 3735 4126 4717 4810 4896 4994 4487 3208 4492 5409 2093 837 11617 1668 3241 14848 401 6357 1769 494 1017 3385 7094 2185 3253 6553 3708 5485 4318 5057 4551 4427 4986 5860 4339 4920 5217 5199 5099 5071 4977 5028 ]
C [ 4622 3625 4932 5923 4181 3987 3524 4787 7689 6752 5818 5450 5156 4554 5194 6293 4398 2387 14439 18017 1525 10143 6860 613 114 251 835 278 1817 12529 2041 9341 5994 4659 3978 3927 3847 5043 5851 6670 5818 4375 5160 4657 4516 4610 4642 4760 4967 4811 ]
G [ 4821 6434 6265 3697 4531 4645 4364 4474 3296 3666 4287 4606 4386 4202 4837 3163 5993 8015 1642 395 2808 6831 1965 2385 18789 12559 10923 18262 14827 1451 8816 5326 2401 5478 5069 4476 7594 5187 5123 3516 3777 5042 5165 5240 5054 4713 4716 5174 5155 5088 ]
T [ 5670 5547 4551 4680 4246 6042 7925 5799 4833 5009 4731 4687 5115 5803 5035 6889 4670 3742 1379 304 3603 911 7487 1707 249 386 6026 519 1892 2188 1602 2701 7905 2863 6798 5665 3794 4266 4028 4940 4972 4276 4889 4736 4766 5031 5096 4548 4454 4626 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.09 -0.06 0.04 -0.07 -0.05 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.04 -0.01 0.12 0.19 -0.02 0.12 0.05 -0.01 -0.03 -0.07 -0.00 -0.04 -0.03 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.06 -0.02 -0.03 0.07 0.05 -0.01 0.03 0.19 0.13 0.11 0.18 0.13 -0.01 0.13 0.05 -0.00 0.03 0.02 0.01 0.04 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.02 -0.06 0.06 -0.04 -0.05 -0.07 0.02 -0.05 0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 477

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages